Gene

This user interface allows a user to load some Affymetrix data in an Excel file and perform some basic operations on it - log transform, log ratio, normalization, noise reduction, filtering, PCA and clustering, in addition to some visualizations like profile plots, boxplots and matrix... Platforms: Matlab

GETHGVBASE returns polymorphism data from the human genome variation db http://hgvbase.cgb.ki.seHGVDATA = gethgvbase(SNPID) reads in a %hgvbase web record fromEMBL and creates a structure DATA %containing fields correspondingto the hgvBase keywords.FIELDNAME DESCRIPTIONS: a complete %description... Platforms: Matlab

General implementation of matlab version of Viterbi algorithm specifically written for gene structure finding problem in mind. However, it can be modified to suit the goal of a user.Input:Transition Probability MatrixEmission Probability MatrixInitial Probability MatrixStates Matrix (ie.... Platforms: Matlab

Starter kit for the 16th MATLAB Programming Contest, November 7-14, 2007.For more information see the contest page:http://www.mathworks.com/contest/splicing/rules.html Platforms: Matlab

GO-Elite is a software tool designed to identify a minimal non-redundant set of Gene Ontology (GO) biological terms and pathways to describe a particular set of input identifiers. This tool calculates over-representation statistics similiar to the program MAPPFinder and subsequently produces... Platforms: Mac

MethMarker facilitates the design and optimization of gene-specific DNA methylation assays. Beyond its use as an epigenetic primer-design tool, it provides extensive support for epigenetic biomarker optimization. For a given gene or genomic region, MethMarker helps design DNA methylation assays... Platforms: Mac

Recent studies describe that the level of gene expression between species is positively correlated with the time that has passed since the species split from a common ancestor (Ranz et al., 2006). Moreover, Khaitovich et al. (2004) found a linear relationship between divergence time and... Platforms: Mac

ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists... Platforms: Mac

Gene Studio is a free tool for modelling of DNA manipulation. It will allow to work with vectors, to design primers, to clone molecules and provide user friendly intewrface. Platforms: Mac

PrimerPlex is an efficient and sophisticated tool for designing oligos for multiplex assays. Multiplex assays facilitate amplification of multiple targets in a single reaction vessel, reducing both the time and cost of experimentation. PrimerPlex designs primers for multiplex PCR assays and... Platforms: Mac

Each TS was tested for functional enrichment using annotation obtained from numerous ontologies or curated databases (Gene Ontology, KEGG, BioCarta, Swiss-Prot, BBID, SMART, NIH Genetic Association DB, COG/KOG, TargetScan, PicTar, TFBSConserved,...). Platforms: Mac

NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues. Platforms: Mac

GUI interface to facilitate comparing gene expression levels at different stage Platforms: Mac

BATEx is the establishment of a data warehouse for array-based gene expression data of plants to enable experiment-spanning expression data analyses. Therefore, data is integrated from various data sources, such as BarleyBase, AtGenExpress, AFGC, TIGR SGED and IPK's operational system FLAREX. In... Platforms: Mac

The Synonym and Global Translator is a Gaggle Enabled Java program that enables a user to translate between different gene identifiers and find orthologous genes for a number of different species through the use of the BioNetBuilder database server. It is free to use, but is no longer actively... Platforms: Mac

GSA-SNP is a gene set analysis software that can process SNP data as well as gene and haplotype data. Platforms: *nix

NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues. Platforms: *nix

Now You Can Load 14,347 Records A Second With The Easy-To-Use Visual Importer ETL If you regularly export, transform or load database data, Visual Importer ETL is designed to Save you time. It does this in three ways: Time Saver #1: Processing Speed Using Visual Importer ETL... Platforms: Windows

Abuse is so good that some specialists consider it to be a 2D version of the legendary Doom. Full of powerful weapons, missiles, aliens and excellent illumination effects, the only difference is that Abuse plays in 3rd person, while Doom plays in 1st.The argument of the game is this: you are the... Platforms: Windows

Sothink Video Encoder for Adobe Flash is not only a powerful and easy-to-use flash video converter or flash video encoder which can convert video to Flash (FLV) file of high quality in just a few seconds, but it also converts video to Flash (SWF) and generate HTML page ? it can automatically... Platforms: Windows