Bioinformatics

VLinux Bioinformatics workbench is a Linux distribution for Bioinformatics. It is easy to use, no installation required, CD-based distribution based on Knoppix 3.3. VLinux Bioinformatics Workbench includes a variety of sequence and structure analysis packages. It is an Open source product...

ReadSeq is a program and library for conversion of biosequence data from one format to another, useful in various bioinformatics programs and services. It is written in Java, though an earlier version in C remains available.

This webinar was recorded on November 20, 2003.Bioinformatics researchers and developers worldwide rely on MATLAB to accelerate scientific discovery and reduce development time. Developers in bioinformatics value the open, component-based architecture of MATLAB, which lets them choose only the...


Platforms: Matlab

DNALinux is a Linux distribution with bioinformatics software pre-installed. We believe that this distro fills an empty niche. Specialized biotech software usually is released as source code only and its not packaged for easy installation on "mainstream" Linux. Most scientific software is...


Platforms: *nix

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,...


Platforms: Windows

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,...


Platforms: Windows

BioDWH is a simple, very easy to use tool specially designed to offer you a bioinformatics data warehouse software kit that integrates biological information from multiple public life science data sources into a local RDBMS. This application provides up-to-date integrated knowledge, platform and...


Platforms: Windows

Bioclipse project is aimed at creating a Java-based, open source, visual platform for chemo- and bioinformatics. Bioclipse, as any RCP application, is based on a plugin architecture that inherits basic functionality and visual interfaces from Eclipse, such as help system, software updates,...


Platforms: Windows, XP, 2003, Windows Vista, 7, 7x64

The Chemistry Development Kit (CDK) is a Java library for structural chemo- and bioinformatics.


Platforms: Windows, Java,

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,...


Platforms: Windows, Mac, Linux

The ORIEL workbench is a data browsing interface for REST-based information retrieval services. Originally developed for Bioinformatics applications.


Platforms: Windows, Mac, Linux

SysGenSIM is a bioinformatics toolbox to create artificial gene expression datasets by simulating Systems Genetics experiments.


Platforms: *nix

The seqlogo tool in the bioinformatics toolbox generates good sequence logos, unfortunately they cannot be incorporated into other programs. This routine generates DNA sequence logos as raw images.


Platforms: Matlab

Bein is a workflow manager and miniature LIMS system built in the Bioinformatics and Biostatistics Core Facility of the EPFL. It fills the gap for the working scientist between the classical shell and big workflow managers like Galaxy and major LIMS systems like OpenBIS. More...


Platforms: *nix

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. This project offers a flexible rendering engine and a powerful plugin architecture. The main concept behind Avogadro...


Platforms: *nix

ToBiX is a Morphix-based Linux live CD containing a range of specialist applications for bioinformatics. With this distrubution you just boot from the CD and you have a fully functional LINUX OS distribution with open source applications. Besides using some RAM, ToBiX doesnt touch the host...


Platforms: *nix

ClusterControl project is a web-interface to simplify distributing and monitoring bioinformatics applications on Linux cluster systems. This software is based on a modular concept that enables integration of command-line oriented programs into the application framework of ClusterControl. The...


Platforms: *nix

Vigyaan is an electronic workbench for bioinformatics, computational biology and computational chemistry. It has been designed to meet the needs of both beginners and experts. VigyaanCD is a live Linux CD containing all the required software to boot the computer with ready to use modeling...


Platforms: *nix

NeoBio project consists of Bioinformatics algorithms in Java. What algorithms? The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman & Wunsch (global alignment) and Smith & Waterman (local alignment)....


Platforms: *nix

Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in...


Platforms: *nix