Bioinformatics

CLC Free Workbench is the foundation for all bioinformatics workbenches from CLC bio. This software package is a community edition, available for download free of charge.The workbench creates a software environment enabling users to make basic bioinformatics analyses and smooth data management,... Platforms: Mac

CLC RNA Workbench - A bioinformatics program for advanced RNA sequence analysis. All analyses are fully integrated in one single, user-friendly, and intuitive software application. Some analyses are:Secondary structure predictionGraphical view and editing of secondary structureTabular view of... Platforms: Mac

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows... Platforms: Windows

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows... Platforms: Windows

Cylindrical BLAST Viewer is a small, easy to use application specially designed to offer users a 3D viewer that arranges BLAST hits and other bioinformatics-related alignments in a rotating, cylindrical display. Basically this tool arranges the alignments in a cylinder, which spins past the eye... Platforms: Windows

caTIES or Cancer Text Information Extraction System is a project focused on two important challenges of bioinformatics.The problems that want to be overcomed are related to information extraction from free text and access to tissue. Specifically, caTIES has three primary goals: · Extract coded... Platforms: Windows, XP, Windows Vista, 7

A bioinformatics program for advanced RNA sequence analysis. All analyses are fully integrated in one single, user-friendly, and intuitive software application. Some analyses are: - Secondary structure prediction - Graphical view and editing of secondary structure - Tabular view of structures... Platforms: Mac

Creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options. Some bioinformatics features are: - GenBank searching and viewing (linear and circular views) - Multiple alignment of... Platforms: Mac

CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. Bioinformatics features in CLC Sequence Viewer Multiple alignment of DNA, RNA, and... Platforms: Windows

AJT is a set of utility classes for Java for handling some bioinformatics data, graphics file export, GUI widgets, and classes that should long have been added to the official Java API. Platforms: Windows, Mac, Linux

AnnTools is an efficient, fast and robust bioinformatics tool annotating SNP and CNV calls generated from sequencing and microarray data. Platforms: Mac, BSD, Linux

BABA stands for Basic-Algorithms-of-Bioinformatics Applet. This project aims to create a set of bioinformatic algorithms presented didactically. The algorithms available at the moment are: Needleman&Wunsch, Smith&Waterman, Four Russians and Nussinov. Platforms: Windows, Mac, Linux

The project aims to extend the PHP scripting language to enable PHP developers to write bioinformatics applications more rapidly than if they had to start from scratch using 'vanilla php'. Platforms: Windows, Mac, Linux

BioQuery is a bioinformatics tool that acts as a query builder for genetic, protein, publication, and other biomedical databases. BioQuery is also an update service that periodically resubmits saved searches and sends you new data as it is found. Platforms: Windows, Mac, Linux

The aim of the BioWeka project is to add bioinformatics functionalities such as e.g. alignments to the popular machine learning framework Weka. Platforms: Windows, Mac, Linux

Current Comparative Table is a bioinformatics tool for running searches (like BLAST) with large sets of genes.It creates a table that allows you to view many results in many databases and downloads databases daily to ensure the most up-to-date results. Platforms: Mac, BSD, Linux

DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV Platforms: Windows, Mac, Linux

DimReduction project provide an open-source multiplatform (Java) graphical environment for bioinformatics problems that supports many feature selection algorithms, pattern recognition techniques, criterion functions and graphic visualization tools. Platforms: Windows, Mac, Linux

Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources. Platforms: Windows, Mac, Linux

DNAGalaxy is an attempt to produce an open-source bioinformatics software alternative to the expensive DNAStar Lasergene software. Its features currently include Blast and Entrez searching, a frontend to clustal and a sequence editor. It requires java1.5 Platforms: Windows, Mac, Linux