Bio Informatics Utility

This software is to help the those connected with Biology,Biotechnology,Bio Informatics.The user can select from the choices of proteins, nucleotides,etc(All those found on NCBI's website)and search for the specific results Platforms: Windows, Mac, BSD, Linux

MESH2D is a toolbox for the generation and manipulation of unstructured triangular meshes in MATLAB. High quality meshes are generated automatically using user defined geometries and shapes.These meshes are suitable for subsequent FEM or FVM analysis.MESH2D will automatically adapt the element... Platforms: Matlab

PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR) and sequencing. It aims to automate and simplify the process of primer design.PerlPrimer's current features include the following: - Calculation of... Platforms: *nix, Perl, BSD

OmicBrowse, developed with Flash and Java, is a highly evaluated genome browser integrating omics knowledge ranging from genomes to phenomes and is especially appropriate for positional-cloning purposes. Platforms: Windows, Mac, *nix, Flash, BSD Solaris

bio library is a collection of algorithms and data structures that are useful when building various bioinformatics-related utilities and tools. Here are some key features of "bio library": ?*A* Sequence data type supporting protein and nucleotide sequences and conversion between them, quality... Platforms: Mac

The BioPHP Project is a non-profit, open source software project that aims to extend the PHP scripting language so it can be used to develop bioinformatics applications. BioPHP is NOT a bioinformatics application. Rather, it is a collection of tools to help PHP developers write bioinformatics... Platforms: Windows, Mac, *nix, PHP, BSD Solaris

Oligomer is a small, simple, Java based application specially designed to help you perform sequence analysis with standard and mixed bases. This tool will also help you find out the physical properties of the sequence, so that you get a complete bio-informatics software. for WindowsAll Platforms: Windows

Cartesio is a web-based groupware application for Linux with PHP, MySQL, Apache, SSL oriented to forensic laboratories. Platforms: Windows, Mac, *nix, PHP, BSD Solaris

The SigmaPi Neural Network Simulator is designed for time-series processing and neural network research on Unix/X11. It uses the LSTM neuron model, the RTRL training algorithm and a heuristic learning rate adaptation based on local update sign-changes.To use SigmaPi, you should know how a... Platforms: Windows, Mac, *nix, C/C++, BSD Solaris

Bio::NEXUS::Functions is a Perl module that provides private utility functions for the module. This package provides private functions that are not object-specific.. Platforms: *nix

The main utility, the Comport, is included in the ReMapPro package makes serial (RS232) data from your PC available on TCP/IP-based networks and makes TCP/IP data available on serial ports on your PC. This makes it possible for any other computer on the same network to send and receive serial... Platforms: Windows, Windows CE

Download URLs utility. Give this utility the list of URLs and the folder where do you want to see files. And press go button. Platforms: Windows

Font viewer  is a font utility. It uses a HTML  for viewing fonts, installed on your PC: View all Fonts. Print the list of fonts. Print sample text of a font. View sample text in all available fonts. Used the Windows clipboard. Copy and paste characters to another program Compare different... Platforms: Windows, Windows CE

Physis Database Export Utility is to make your work with databases more efficient and even enjoyable. It converts Unlimited Databases, including (Firebird , Interbase ,PostGre-Sql , Sybase, SqlLite, Mysql, Oracle, Microsoft Access, Microsoft SQL Server, Excel and text files or ODBC) tables to... Platforms: Windows

Bio::Tree::NodeNHX is a Simple Tree Node with support for NHX tags. SYNOPSIS use Bio::Tree::NodeNHX; my $nodeA = new Bio::Tree::NodeNHX(); my $nodeL = new Bio::Tree::NodeNHX(); my $nodeR = new Bio::Tree::NodeNHX(); my $node = new Bio::Tree::NodeNHX(); $node->add_Descendents($nodeL);... Platforms: *nix

Bio::Graphics::Glyph::alignment is the "alignment" glyph. SYNOPSIS See L< Bio::Graphics::Panel > and L< Bio::Graphics::Glyph >. This is identical to the "graded_segments" glyph, and is used for drawing features that consist of discontinuous segments. The color intensity of each segment is... Platforms: *nix

Bio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats. SYNOPSIS use Bio::OntologyIO; # do not use directly -- use via Bio::OntologyIO my $parser = Bio::OntologyIO->new ( -format => "simplehierarchy", -file => "pathology_terms.csv",... Platforms: *nix

Bio::Tools::Run::PiseWorkflow is a class to create a Pise workflow using Pise application objects as methods. A workflow is defined by a set of methods which all instanciate the class PiseApplication. SYNOPSIS # First, create a Bio::Tools::Run::AnalysisFactory::Pise object: my $factory = new... Platforms: *nix

Bio::Tools::AlignFactory is a base object for alignment factories. SYNOPSIS You wont be using this as an object, but using a dervied class like Bio::Tools::pSW Holds common Alignment Factory attributes in place. Platforms: *nix

Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =... Platforms: *nix