Visualize Macromolecular Structure

CueMol is a program for the macromolecular structure visualization on the Windows platform (CueMol was formerly called "Que"). CueMol aims to visualize and build the crystallographic models of macromolecules, with the user-friendly interfaces. Currently supported files are molecular coordinates... Platforms: Windows

CueMol is a program for the macromolecular structure visualization on the Windows platform (CueMol was formerly called "Que"). CueMol aims to visualize and build the crystallographic models of macromolecules, with the user-friendly interfaces. Currently supported files are molecular coordinates... Platforms: Windows

txt2graph should visualize the structure and dependencies of a text. It reads a text document from stdin, removes all non-alphas and generates an array (list) of words. Then it converts german-umlauts, because graphviz can only handle clean ASCII as node-description and output a dot-file for a... Platforms: *nix, Perl, BSD

XML::DocStats is a Perl module to produce a simple analysis of an XML document. SYNOPSIS Analyze the xml document on STDIN, the STDOUT output format is html: use XML::DocStats; my $parse = XML::DocStats->new; $parse->analyze; Analyze in-memory xml document: use XML::DocStats; my... Platforms: *nix

mod_litbook is an alternate method for referencing documents. mod_litbook is an experiment in web techonology - an experiment in document reference and retrieval is at the core of this module. Although the initial "Proof of Concept" is the King James Bible, the concept has a broader range of... Platforms: *nix

The Python Macromolecular Library (mmLib) is a software toolkit and library of routines for the analysis and manipulation of macromolecular structural models, implemented in the Python programming language. It is accessed via a layered, object-oriented application programming interface, and... Platforms: Windows, Mac, *nix, Python, BSD Solaris

GraphViz::Data::Structure can visualise data structures. SYNOPSIS use GraphViz::Data::Structure; my $gvds = GraphViz:Data::Structure->new($data_structure); print $gvds->graph()->as_png; This module makes it easy to visualise data structures, even recursive or circular ones. It is... Platforms: *nix

Tree::Visualize is a Perl module for visualizing Tree structures. SYNOPSIS use Tree::Visualize; use Tree::Binary; my $tree = Tree::Binary->new("*") ->setLeft( Tree::Binary->new("+") ->setLeft(Tree::Binary->new("2")) ->setRight(Tree::Binary->new("2")) ) ->setRight(... Platforms: *nix

If you are processing unicode strings and you want to print the string but run into UnicodeEncodeError all the time, this script shows you some simple steps to visualize unicode strings. Platforms: Windows, Mac, *nix, Python, BSD Solaris

Dependency Structure Matrices (DSMs) are very useful in the analysis and verification of software architectures because they allow the analyst to more easily understand inter-module dependencies than traditional box and arrow techniques which become impossible to use for all but the simplest... Platforms: Windows, ASP.NET,

This structure is a kind of dictionary which allows you to map data intervals to values. You can then query the structure for a given point, and it returns the value associated to the interval which contains the point.Boundary values don't need to be an integer ; in the test unit a date-time... Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script implements the Union Find data structure and algorithm. This data structure allows one to find out which set an object belongs to, as well as join two sets. The algorithm's performance, given m union/find operations of any ordering, on n elements has been shown to take log* time per... Platforms: Windows, Mac, *nix, Python, BSD Solaris

This code optimises the parameters for the term structure of volatility (TSOV) applied to historical forward curves - see discussion in Harris in reference 1 below. TSOVs avaible are: TermType - 1 = sigma = A exp (-CT) - 2 = sigma = A exp (-CT) + D - 3 = sigma = (A + BT) exp (-CT) + DRequired... Platforms: Matlab

PHP Tree Structure stored in MySQL database is a php script to store and manipulate tree structure in a mysql database, is a free PHP code generator.An example of a typical uses for this would be a web directory. Its important to note that the script and the table are meant only to... Platforms: PHP

Backup database structure accesses a given MySQL database and generates files with SQL statements that can be used later to restore the database structure and data in the database.The database dump file can optionally be saved in a compressed format in order to minimize its size. Platforms: PHP

Database structure synchronizer then generates the SQL statements required to update one of the database to the other.Database structure synchronizer determines what changed from one database to the other and generates schema alteration SQL statements to create, drop and alter tables that should... Platforms: PHP

MySQL Structure Magic can analyze the schema of a MySQL database and export it as a PHP array definition or in a XML format. Previously exported schema definitions can also be imported.With an initial and final schema definitions MySQL Structure Magic can compare them and determine the necessary... Platforms: PHP

Minecraft Structure Planner is a companion application for the insanely popular sandbox game Minecraft. The Structure planner allows anyone to quickly and easily create a variety of structures for building in the game, Structures are defined using a simple set of number fields, texture... Platforms: Mac

APM Structure 3D is the light version of component for strength and dynamic analysis of parts and structures by finite element method. It is a useful utility for engineers and technical designers. APM Structure 3D is a universal system intended to perform complex analysis and design of rod,... Platforms: Windows

Structure is a screensaver for Mac OS X that draws on the National Center for Biotechnology Information's protein databases to display beautiful 3D protein structures on your screen. It ships with about ten sample structures and via the Internet has seamless access to a database of tens of... Platforms: Mac