Stoik Imaging

Data Reduction and Imaging Software for Bolometer Arrays

The dwi-toolbox provides a set of free and open-source Matlab routines for the simulation and analysis of Diffusion-Weighted Magnetic Resonance Imaging data. It includes data-fitting, simulation, visualization and statistical components.

The Huygens Remote Manager is an open-source, efficient, multi-user web-based interface to the Huygens software by Scientific Volume Imaging (http://www.svi.nl/) for parallel batch deconvolutions.


Platforms: Mac, Linux

JImageView allows viewing of GIF, JPEG, PNG, TIF, BMP (Win95 type), and any other type of images that the Java Advanced Imaging (JAI) API supports. Images can be zoomed in or out and thumbnails can be cached to disk.


Platforms: Windows, Mac, Linux

MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic


Platforms: Windows, Mac, Linux

Create simple Web graphics using Javascript and headless AWT. Images are rendered at runtime in a variety of formats (PNG and JPG) and accessible through a servlet-based gateway.


Platforms: Windows, Mac, Linux

This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from...


Platforms: Matlab

A flexible tool for medical research in magnetic resonance imaging (MRI) to generate parametric images (maps) from multiple types of pulse sequences (IR-prepared, Look-Locker, and MOLLI T1 mapping; single- and multi-echo T2/ T2* mapping).


Platforms: Windows, Mac, Linux

Nounou is a Java library for handling optical imaging data. The core consists of a modular stream of 'filter blocks' that each modify or display the data. It is easily called from Mathematica and Matlab, for advanced figure output.


Platforms: Windows, Mac, Linux

UberImaging centrally controls the disk imaging process of many nodes on a network. Clients booted via PXE are served a small initrd image containing udpcast, a client module, and other tools allowing clients to be remotely controlled by a portable GUI.


Platforms: Windows, Mac, Linux

The Library is for Finite Transforms such as the Number Theoretic Transform (NTT) and others. Current modules include NTTW for NTTs with high resolution (microsecond) timing, basic array and imaging. The transforms are optimised for performance.


Platforms: Mac

'animal-imaging' is a project to collect and disseminate information on imaging technologies (e.g. CT, MRI, PET, ultrasound) pertinent to the vivo imaging of animals.


Platforms: Windows, Mac, Linux

This is set of functions that allow opening of Molecular Imaging atomic force microscope files into Matlab matrix. Unzip the files in one directory and type in Matlab command prompt:y=ReadSTP('pathfilename.stp',buffer number).Matrix y will contain z values of measured surface. Comments will show...


Platforms: Matlab

libfprint is an open source software library that was designed to make it easy for application developers to add support for consumer fingerprint readers to their software. Here are some key features of "Libfprint": ?*A* Written in C ?*A* Licensed as LGPL-2.1 ?*A* Depends on libusb for USB...


Platforms: Mac

SAOImage DS9 is an astronomical imaging and data visualization application. DS9 supports FITS images and binary tables, multiple frame buffers, region manipulation, and many scale algorithms and colormaps. It provides for easy communication with external analysis tasks and is highly configurable...


Platforms: *nix

Phantom Image is a disk imaging tool written for Linux. Disk images can be used to clone computers or back up hard drives. Transparently supports local, network, CD, and other image storage locations.


Platforms: *nix

iSurf BrainView is a Brain MRI tutor based on the MRI automatic segmentation produced by FreeSurfer. FreeSurfer is a software package developed by investigators at the Athinoula A. Martinos Center for Biomedical Imaging. This App uses its automatic segmentation to produce an automatic atlas of...


Platforms: Mac

Vampyre Imaging Library is cross-platform native Object Pascal (Delphi and Free Pascal) image loading, saving, and manipulation library. Imaging library features: * Native Object Pascal open source crossplatform library with no dependencies on any dynamically linked libraries or other platform...


Platforms: Mac

This case study shows how MATLAB can be used for a medical imaging problem. Given an MRI scan, first segment the brain mass from the rest of the head, then determine the brain volume. Also compare portions of gray and white matter present. This example was developed for seminars. It was also used...


Platforms: Matlab

plone.app.imaging introduces new ways of using image scales in your templates. There are several variants you can pick from depending on how much flexibility/convenience you need:


Platforms: *nix