Shadowrun Genes
MCGH is a Matlab toolbox with graphical interface to analysis DNA microarray-based comparative genomic hybridization (CGH) experiments. CGH on DNA microarray enable us to measure the copy numbers of thousands of genes through the genome. M-CGH allows us to visualize the copy number changes...
Platforms: Matlab
License: Freeware | Size: 5.18 MB | Download (41): MCGH Download |
Genes4all is a package of modules for visualizing bioinformatic information using GMOD, BioPerl and Chado. It depends on the gmod_dbsf module (http://drupal.org/project/gmod_dbsf) and is in active development. See also http://drupal.org/project/biosoftware_bench.Currently two (sub)modules are...
Platforms: PHP
License: Freeware | Size: 51.2 KB | Download (39): Genes4all Download |
This projects simulates the evolution of critters in their environment. There are 32 critters which all have DNA in the form of two 8-bit numbers (actually they are 32-bit, but only 8 bits are used). The first set of genes determines the color of the critter. The other set of genes are sex genes....
Platforms: Mac
License: Freeware | Size: 629 B | Download (45): Speciate Download |
HaMSTR is a Hidden Markov Model based search tool to screen EST sequence data for the presence of putative orthologs to a pre-defined set of genes. A-priori knowledge about orthology-relationships among genes in different sets of reference species is extracted from the Inparanoid-Database....
Platforms: Mac
License: Freeware | Size: 61.87 MB | Download (36): HaMSTR Download |
Recent studies describe that the level of gene expression between species is positively correlated with the time that has passed since the species split from a common ancestor (Ranz et al., 2006). Moreover, Khaitovich et al. (2004) found a linear relationship between divergence time and...
Platforms: Mac
License: Freeware | Size: 829.44 KB | Download (42): EMOGEE Download |
ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists...
Platforms: Mac
License: Freeware | Size: 21.13 MB | Download (34): ErmineJ Download |
This script uses the gene name field(s) in a table downloaded from the UCSC Genome Browser to add gene names to an existing SVS marker map saved in the DSM file format. Note: Though the following instructions specify downloading a table containing genes based on the Mar. 2006 (NCBI36/hg18) Human...
Platforms: Mac
License: Freeware | Size: 10.24 KB | Download (47): Add Gene Names to Marker Map Download |
PathVisio is a tool for displaying and editing biological pathways. In a sense PathVisio lets you draw pathways as you would in any drawing program, like PowerPoint or Photoshop. But the difference is that PathVisio can understand the biological context of a pathway, because you can link...
Platforms: Mac
License: Freeware | Size: 10.24 KB | Download (35): PathVisio Download |
Este Service Menu para KDE4 sirve para facilitar la creaci?*N*n de comic book en formatos cbr, cbz o pdf, tambien permite el escalado y conversi?*N*n a escala de grises para usar en un ebook. Caracter?*A*sticas * Convierte directorios de im?*?Zgenes a ficheros de tipo CBR, CBZ o PDF *...
Platforms: *nix
License: Freeware | Size: 20.48 KB | Download (36): Comic Book Trasformer Download |
PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees. Features: * Reading pedigree files in user-defined formats * Checking pedigree integrity (duplicate IDs,...
Platforms: *nix
License: Freeware | Size: 14.77 MB | Download (34): PyPedal Download |