Sequence Assembly Gap

THREDDS (short from Thematic Realtime Environmental Distributed Data Services) project is developing middleware to bridge the gap between data providers and data users. The goal is to simplify the discovery and use of scientific data and to allow scientific publications and educational materials... Platforms: *nix

Bio::SeqIO::fastq is a fastq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::SeqIO class. This object can transform Bio::Seq and Bio::Seq::SeqWithQuality objects to and from fastq flat file databases. Fastq is a file format used frequently at... Platforms: *nix

TALK is a strictly and statically typed assembly language that is flexible and powerful enough to write operating system kernels. For example, memory management (i.e. malloc/free) and multi-thread management can be implemented in TALK.. Platforms: *nix

TOS is an experimental operating system kernel which is written in our strictly and statically typed assembly language, TALK. Today, computers (PCs, cell-phones, etc.) are widely used in the world and their network become one of the indispensable social infrastructures. Therefore, the... Platforms: *nix

This is a small utility that cleans up the registry in those cases where huge gaps of whitespace is displayed in the add/remove programs control panel applet. The gap is caused by a badly formatted "DisplayedIcon" entry in the uninstall area of the registry or a bad icon file. We read about the... Platforms: Windows

SeqEntropy was designed as an accessible, easy-to-use and handy assessment instrument of sequence repeats for short read sequencing. Now you can access and make use of this useful tool directly from the Command Line Interface found in your system. Platforms: Windows

ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence. This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll Platforms: Windows

Oligomer is a small, simple, Java based application specially designed to help you perform sequence analysis with standard and mixed bases. This tool will also help you find out the physical properties of the sequence, so that you get a complete bio-informatics software. for WindowsAll Platforms: Windows

UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. for WindowsAll Platforms: Windows

ClaMS is a handy application specially designed to offer you a sequence composition-based classifier for metagenomic sequences. ClaMS works by capturing signatures of each sequence based on the sequence composition. Each sequence is modeled as a walk in a de Bruijn graph with underlying Markov... Platforms: Windows

Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation. Artemis is written in Java, and is available for UNIX, Macintosh and... Platforms: Windows, Mac, Linux, Java

ApneaStaticTrainer is a small, easy to use, handy application specially designed to help you create breath hold sequence for free diving trainings. Basically this tool will help you build O2 and CO2 tables for apnea trainnig and save them as MP3 files. So, if you were looking for a program... Platforms: Windows

This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. Some analyses are: - Assembly of DNA sequencing data - Graphically and... Platforms: Mac

KeyPressList is a simple, easy to use tool designed to emulate pressing a sequence of keys to the foreground window. Each line from input file represents a key combination such as ALT-TAB or CONTROL-SHIFT-A or ...each key has a programmable pre-press delay. Platforms: Windows

SQLite Metadata Reader is designed as a C# assembly that returns the metadata of a SQLite database as returned by the ADO.NET adapter, System.Data.SQLite as classes. Now you can make use of this tool to further improve your development process. Platforms: Windows

LSC Editor is designed to be a graphical editor and code generator for Live Sequence Charts (LSCs). The code generated follows a simple execution mechanism. It shows a possible execution path. for WindowsAll Platforms: Windows

Msc-generator is an easy to use, simple tool designed to enable you to draw Message Sequence Charts for telecommunication applications from textual description. Message Sequence Charts (MSCs) are a way of representing entities and message interactions over some time period and are often used in... Platforms: Windows, XP, Windows Vista, 7

The Legible Assembler is an Open Source attempt to build an assembler that can convert Legible Assembly code into a linkable PE object file. Legible Assembly will use a mixture of AT&T and Intel styles, prepositions and carriage return line separators. Platforms: Windows

RadASM is an integrated development environment for many programming languages, assembly as well as high level ones. As every RAD Software product, it makes application development easy and fast by providing sophisticated functions and integrated clever tools. FEATURES: · Support for many... Platforms: Windows

Mallard is a handy, Java based application based on the Pintail algorithm designed to work by comparing evolutionary distances between a query and subject sequence over the length of the 16S rRNA gene (small subunit rRNA), by employing a sampling window of specified size, progressing a fixed... Platforms: Windows