Sensory Neuron Anatomy

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Routine accepts input variables, binary target variable (0/1) and a small number of training parameters, and returns discovered coefficients for a single neuron.Technical details:Learning rule: incremental delta ruleLearning Rate: constantTransfer function: logisticExemplar presentation order:... Platforms: Matlab

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A program designed to display 3D medical imaging. By using your computer's graphics card, it can allow real-time interactive rendering. It includes scripts to show you some of the many effects. The software comes with sample MRI and CT scans, as well the 3D photographs from the visible human... Platforms: Mac

The accompanying code is the simulation of a simplified version of a synfire chain in a cortical network, inspired by the ideas of Abeles (1982, 1991), Bienenstock (1995), and Diesmann et al. (1999). In a synfire chain groups, or pools, of neurons are connected in a feedforward arrangement. The... Platforms: Matlab

This is a simulink realization of Morris-Lecar neuron model.Run the ML_parameter.m first to load the parameters to the Workspace,and then run the ML.mdl to simulatethe ML neuron model.The parameters and ode algorithm,step length,can be changed to your own... Platforms: Matlab

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This function graphs the neuron's weight and the input vectors. You can label the neurons and inputs, change the marker size, and color code the map to see which inputs activate which neurons (a visual representation of the approximation of the input field of a neuron in the adaptive network). Platforms: Matlab

iqr is a simulation software to graphically design and control large-scale neuronal models. Simulations in iqr can control real-world devices in real-time. iqr can be extended by new neuron, and synapse types, and custom interfaces to hardware. Platforms: Windows, Mac, Linux

If the input is a bandlimited signal containing components at DC - 0.5Fs where Fs is the sample rate, SINCRESAMPLE will return the signal that would have been seen with a higher sampling rate (and the same filter settings). The algorithm depends on the fact that the bandlimited signal is... Platforms: Matlab

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Simulink implementation of nodose neuron action potential firing with parameters from the following studies:Schild,J.H., Clark,J.W., Hay,M., Mendelowitz,D., Andresen,M.C., and Kunze,D.L. (1994). A- and C-type rat nodose sensory neurons: model interpretations of dynamic discharge characteristics.... Platforms: Matlab

Simulation describing the electrophysiological behavior of a biological neuron (nerve cell). Two sets of membrane kinetics are included: Hodgkin-Huxley and Schwarz for unmyelinated and myelinated axons. Platforms: Matlab

Neurofitter is a parameter tuning package for electrophysiological neuron models. For more information please take a look at http://neurofitter.sourceforge.net Platforms: Windows, Mac, BSD, Linux

Run "parrecreader.m"This program reads the native PAR/REC files, imports them to Matlab workspace and displays them.This is a stripped down version of code developed for MR Elastography purposes, but should be useful for other applications as well.Two sample datasets are included: i)T2W anatomy... Platforms: Matlab

This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from... Platforms: Matlab

By this small MATLAB script it is possible to interactively acquire the quantitative morphology for a bidimensional photograph of cultured neurons.The output, a smaller subset of the *.ASC NeuroLucida ascii format, is compatible with the NEURON simulating environment tool "Import 3D". Platforms: Matlab

Topographica is a software package for computational modeling of neural maps. The goal is to help researchers understand brain function at the level of the topographic maps that make up sensory and motor systems. Topographica's full documentation can be found at http://topographica.org/.... Platforms: *nix

Matlab GUI for neuron counting frequency filtering to remove background fluorescence Otsu's method for thresholding, with user interaction Original image courtesy of Lan Guo Platforms: Matlab