Robert Earl Keen Bio
Netacct is a PHP Web interface for Netacct-MySQL, the popular traffic statistics daemon for Linux and BSD. Uses libpcap to collect accounting info. Works on linux, freebsd, openbsd, solaris. Accounting information is stored in mySQL. Support per hour statistics. Web interface is included also....
Platforms: *nix
License: Freeware | Size: 100.35 KB | Download (93): Netacct Download |
Bio::PrimarySeqI is a Perl Interface definition for a Bio::PrimarySeq. SYNOPSIS # Bio::PrimarySeqI is the interface class for sequences. # If you are a newcomer to bioperl, you should # start with Bio::Seq documentation. This # documentation is mainly for developers using # Bioperl. #...
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Bio::Ontology::Ontology is a standard implementation of an Ontology. SYNOPSIS use Bio::Ontology::Ontology; # create ontology object my $ont = Bio::Ontology::Ontology->new(-name => "OBF"); # add terms, relationships ... my $bp = Bio::Ontology::Term->new(-name => "Bioperl"); my $obf =...
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License: Freeware | Size: 4.7 MB | Download (92): Bio::Ontology::Ontology Download |
Bio::MAGE::Protocol::SoftwareApplication is a Perl module. SYNOPSIS use Bio::MAGE::Protocol::SoftwareApplication; # creating an empty instance my $softwareapplication = Bio::MAGE::Protocol::SoftwareApplication->new(); # creating an already populated instance my $softwareapplication =...
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Bio::DB::GFF::Feature is a relative segment identified by a feature type. Bio::DB::GFF::Feature is a stretch of sequence that corresponding to a single annotation in a GFF database. It inherits from Bio::DB::GFF::RelSegment, and so has all the support for relative addressing of this class and...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (92): Bio::DB::GFF::Feature Download |
Bio::NEXUS::TreesBlock is a Perl module that represents TREES block of a NEXUS file. SYNOPSIS if ( $type =~ /trees/i ) { $block_object = new Bio::NEXUS::TreesBlock( $block_type, $block, $verbose ); } If a NEXUS block is a Trees Block, this module parses the block and stores the tree data....
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (91): Bio::NEXUS::TreesBlock Download |
Bio::TreeIO::svggraph is a simple output format that converts a Tree object to an SVG output. SYNOPSIS use Bio::TreeIO; my $in = new Bio::TreeIO(-file => input, -format => newick); my $out = new Bio::TreeIO(-file => >output, -format => svggraph); while( my $tree = $in->next_tree ) { my...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (91): Bio::TreeIO::svggraph Download |
Bio::NEXUS::UnalignedBlock is a Perl module that represents an UNALIGNED block of a NEXUS file. SYNOPSIS if ( $type =~ /unaligned/i ) { $block_object = new Bio::NEXUS::UnalignedBlock($type, $block, $verbose); } This is a class representing an unaligned block in NEXUS file METHODS new...
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License: Freeware | Size: 153.6 KB | Download (91): Bio::NEXUS::UnalignedBlock Download |
Bio::NEXUS::Functions is a Perl module that provides private utility functions for the module. This package provides private functions that are not object-specific..
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License: Freeware | Size: 153.6 KB | Download (91): Bio::NEXUS::Functions Download |
bio2jack is a library that allows for simple porting of general purposed bio (blocked io) OSS/ALSA audio applications to Jack. This library allows the person porting the code to simply replace the calls into OSS/ALSA with calls into interface functions of this library. The library buffers a...
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License: Freeware | Size: 532.48 KB | Download (91): bio2jack Download |
Bio::NEXUS::WeightSet is a Perl module that represents column weights in alignment ( for each character). SYNOPSIS new Bio::NEXUS::WeightSet($name, @weights, $iswt); A module representing column weights in alignment (for each character) METHODS new Title : new Usage : $node = new...
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License: Freeware | Size: 153.6 KB | Download (90): Bio::NEXUS::WeightSet Download |
Bio::Location::CoordinatePolicyI is an abstract interface for objects implementing a certain policy of computing integer-valued coordinates of a Location. SYNOPSIS # get a location, e.g., from a SeqFeature $location = $feature->location(); # examine its coordinate computation policy print...
Platforms: *nix
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Bio::Phylo::Treedrawer::Svg is a Perl module that creates svg tree drawings. No serviceable parts inside. This module creates a scalable vector graphic from a Bio::Phylo::Trees::Tree object. It is called by the Bio::Phylo::Treedrawer object, so look there to learn how to create tree drawings....
Platforms: *nix
License: Freeware | Size: 102.4 KB | Download (90): Bio::Phylo::Treedrawer::Svg Download |
Bio::NEXUS::NotesBlock is a Perl module that represents a NOTES block in a NEXUS file. Placeholding module for the Notes Block class..
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (90): Bio::NEXUS::NotesBlock Download |
OntologyEngineI is a Perl interface a minimal Ontology implementation should satisfy. This describes the minimal interface an ontology query engine should provide. It intentionally doesnt make explicit references to the ontology being a DAG, nor does it mandate that the ontology be a...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (90): Bio::Ontology::OntologyEngineI Download |
Bio::NEXUS::SetsBlock is a Perl module that represents SETS block of a NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::SetsBlock($block_type, $block, $verbose); Parses Sets block of NEXUS file and stores Sets data. METHODS new Title : new Usage : $block_object = new...
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Bio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats. SYNOPSIS use Bio::OntologyIO; # do not use directly -- use via Bio::OntologyIO my $parser = Bio::OntologyIO->new ( -format => "simplehierarchy", -file => "pathology_terms.csv",...
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License: Freeware | Size: 4.7 MB | Download (87): Bio::OntologyIO::simplehierarchy Download |
Bio::ClusterI module is a cluster Perl interface. SYNOPSIS # see the implementations of this interface for details but # basically my $cluster= $cluster->new(-description=>"POLYUBIQUITIN", -members =>[$seq1,$seq2]); my @members = $cluster->get_members(); my @sub_members =...
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Bio::NEXUS::MatrixBlock is a Perl module that provides functions for handling blocks that have matrices. SYNOPSIS This module is the super class of Characters, Unaligned, and Distances block classes, and indirectly it is a super-class of Data and History blocks, which are both sub-classes of...
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License: Freeware | Size: 153.6 KB | Download (86): Bio::NEXUS::MatrixBlock Download |
complete ERP/CRM for a small company. Contact / customer history / register of documents / rought estimate / work sheet / time report. All integrated all in PHP and MySql. Different Login access (admin, user...)
Platforms: Windows, Mac, Linux
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