Recombination

LDhat is a C/C++ written project that was specially designed for the analysis of recombination rates from population genetic data. The following programs are included: · convert: Simple manipulation of DNA sequence data · pairwise: Parametric and nonparametric analyses of recombination ·... Platforms: Windows

Recco analyzes alignments of sequences that evolved subject to recombination and mutation. The analysis provides evidence as to whether a dataset contains recombination, which sequence is a recombinant and where the recombination breakpoints are. The analysis is based on explaining one sequence... Platforms: Mac

Recodon is a population genetic simulator that generates samples of nucleotide and codon sequences from populations with recombination, migration and growth. The last version includes new codon models (M1, M7 y M8) and new output options. Platforms: Windows

Textbender project is a toolkit for collaborative authoring based on structures and methods derived from nature. Structures include a genetic code, populations, and a gene pool. A text is encoded with genetic markup and then distributed out to writers to form a population of copies and a gene... Platforms: *nix

SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection. Platforms: Windows, Mac, Linux

Features:1. the program calculates the matter power spectrum, temperature spectrum, polarisation- and cross-correlation spectrum of a curved or flat Friedman-Robertson-Walker universe.2. it calculates the age of the universe, sigma8 and the age of the first start formation.3. massless neutrino's,... Platforms: Matlab