Rearrangements

Using super-fast, integrated, high-performance computing algorithms, CLC Genomics Workbench sets a new standard for desktop based reference assembly and de novo assembly of SOLiD, Solexa, 454, and Helicos sequencing data# De novo assembly of Sanger, 454, Solexa, Helicos, and SOLiD data -... Platforms: Mac

SVDetect is a application for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies This tool aims to identifying structural variations with both clustering and... Platforms: *nix

Simple command-line utility for renaming files using an intuitive but powerful syntax (like regex, only much easier). Perform string operations (e.g. case conversions, rearrangements of substrings), arithmetic operations (e.g. on numbers in the filename), enumerate files (e.g. by name, size,... Platforms: Windows