Protein Aligns

MGWT: Identification of protein coding regions using the ModifiedGabor-wavelet transform.Sequence of test:F56F11.4.fasta (included into the zip file)http://www.ncbi.nlm.nih.gov/entrez/viewer....de&val=AF099922http://www.vision.ime.usp.br/~jmena/projec...ome_results/F5/References:[1] J. P.... Platforms: Matlab

Aligns matrix entries so that the center of the time series corresponds to the maximum value of the time series. Platforms: Matlab

UNFOLDPROTEIN(data, bracket) calculates the melting temperature, Tm, of a protein from a given Nx2 array of unfolding data (with N >= 10). In the case of unfolding studies performed using circular dichroism spectroscopy, the second Tm calculated using the maximum of the first derivative of the CD... Platforms: Matlab

To further understand the implementation of hyperparameters re-estimation technique in Bayesian hierarchical model, we added two more prior assumptions over the weight in BayesPI, namely Laplace prior and Cauchy prior, by using the evidence approximation method. In addition, we divided... Platforms: Matlab

FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Platforms: *nix

Cscape is an application for visualizing and navigating through data from a Reverse Phase Protein Microarray (RPMA). Cscape uses the Google Maps API to map the RPMA data on top of an image of a cancer cell and its associated pathways. Platforms: *nix

The Protein Data Bank (PDB) was established in 1971 as a repository of the atomic coordinates of protein structures (Bernstein et al., 1997). It has since outgrown that role, proving invaluable not only to the research community but also to students and educators (Berman et al., 2002). WWW::PDB... Platforms: *nix

Fast5 is a probabilistic file format for the storage of nucleotide and protein sequences based on hdf5. Platforms: *nix

ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics. The input for ProDy is the atomic coordinates of... Platforms: *nix

Bio2Midi converts the text of a DNA or protein sequence to a MIDI file, which you may immediately audition, or import into any MIDI sequencer for further compositional processing. Choose to listen to the sequences as 4-note DNA bases, or as 20-note protein amino acids, or both at once. You can... Platforms: Windows

Pimp My Meal 1.0 is a simple program that calculates the quantity of calories according to grams of protein, fat and carbohydrates, and expresses the results in a diagram where you can also see percentages.Calculate the BMI: Body Mass Index, and the BMR: Basic Metabolism Rate, or the calories... Platforms: Windows

StrBio is a set of Java classes and libraries useful for development of software for computational structural biology research. They are licenced under the LGPL. he strbio.org classes are the basis for several published research projects, including the Pred2ary secondary structure prediction... Platforms: *nix

Once installed just drag this widget to the top left corner of your screen. Now you can drop new widgets and aligns them. When youlre done just close it and everything will stay in place! This widget is still under development and it will be improved ASAP. Platforms: Mac

Structure is a screensaver for Mac OS X that draws on the National Center for Biotechnology Information's protein databases to display beautiful 3D protein structures on your screen. It ships with about ten sample structures and via the Internet has seamless access to a database of tens of... Platforms: Mac

The ProtParam widget computes physico-chemical parameters for your protein sequences at ExPASy. You just have to type or paste your sequence in the input field. Platforms: Mac

Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time. SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences). The... Platforms: Windows

A protein / macromolecule visualization tool that runs as a screensaver module. It colorfully renders PDB (Protein Data Bank) files using unique algorithms. The module automatically annotates, colors, and rotates structures for an educational and captivating display. Show off your research or... Platforms: Mac

A proteomics analyzation software capable of extracting information from the online universal protein resource database UniProt. ProteinID Finder imports your mass spectrometer analyzed protein lists (uniprot accession numbers) into experiments and organizes your proteomics experiments into... Platforms: Mac

The Mars Calendar aligns by setting Januaria 1 BCM as the winter solstace on Mars, thus putting the start of Martian reckoning of the year 1 ADM into alignment with January 1, 1 AD of the Earth-based Gregorian Calendar. This means March (Mars in Latin) is the beginning of the year as it was in... Platforms: Windows

ALIGN aligns data in ASCII text files into neat columns. Also converts comma-delimited files to columns with 2 spaces between each column. Input fields must be separated by commas or white space. Fields may contain spaces if they are enclosed in single or double quotes or C comments /* ... */ or... Platforms: Windows