Probabilistic

FRET is a *nix command line tool that examines any file or files and attempts to identify the data structures and patterns within those file(s). FRET project does this by firstly scanning files using heuristic algorithms to identify structures and then by comparing files to identify common... Platforms: *nix

SimCList project is a high quality C library for handling lists. SimCList is available for free, under restrictions imposed by the BSD license. SimCList API is good because: - it is simple, yet powerful - it makes elegant and consistent use of information hiding - it abstracts the actual... Platforms: *nix

libsift is an algorithm to identify and locate interesting points within an image. For all such points, a descriptive signature is extracted. The signatures can be stored and matched among multiple images, allowing for a large number of interesting applications, such as aligning overlapping... Platforms: *nix

Xprobe is an alternative to some tools which are heavily dependent upon the usage of the TCP protocol for remote active operating system fingerprinting. Xprobe I combines various remote active operating system fingerprinting methods using the ICMP protocol, which were discovered during the... Platforms: *nix

The Genome Positioning System (GPS) is a software tool to study protein-DNA interaction using ChIP-Seq data. GPS builds a probabilistic mixture model to predict the most likely positions of binding events at single-base resolution. GPS is a Java software, so it runs on multiple platforms,... Platforms: Windows

PyBact is a Python written program designed for bacterial identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test Platforms: Windows

BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale. Platforms: Windows, Mac, BSD, Linux

The Modular toolkit for Data Processing (MDP) is a Python data processing framework. From the user's perspective, MDP is a collection of supervised and unsupervised learning algorithms and other data processing units that can be combined into data processing sequences and more complex... Platforms: Windows, Mac, Linux

PyCogent: A toolkit for making sense from sequence. PyCogent includes connectors to remote databases, built-in generalized probabilistic techniques for working with biological sequences, and controllers for 3rd party applications. Platforms: Windows, Mac, Linux

This software has been realized at the Technology Lab, Department of Cognitive and Neural Systems, Boston University - http://techlab.bu.edu. The main author of the software is Praveen Pilly ( http://techlab.bu.edu/members/advait/ ).How does the brain make perceptual decisions? Speed and accuracy... Platforms: Matlab

Matlab Toolbox for Submodular Function Optimization (v 2.0)By Andreas Krause (krausea@gmail.com).Slides, videos and detailed references available at http://www.submodularity.orgTested in MATLAB 7.0.1 (R14), 7.2.0 (R2006a), 7.4.0 (R2007a, MAC), 7.9.0 (MAC)This toolbox provides functions for... Platforms: Matlab

Belief networks (also called Bayesian networks or causal networks) are a representation for independence amongst random variables for probabilistic reasoning under uncertainty. The purpose of this tool is to illustrate how probabilities are updated given new evidence in a belief network, and... Platforms: Mac

Colombia Radio Stations is a simple script shamelessly recopied for Amarok 2. It offers you some Colombian radio streams. Platforms: *nix

Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier. Platforms: *nix

This module implements an import hook for verifying Python modules before they are loaded, by means of cryptographically-signed hashes. It is compatible with PEP 302 and designed to complement the code-signing functionality of your host OS (e.g. Microsoft Authenticode, Apple OSX Code Signing)... Platforms: *nix

jp-reading-alt is a Python module for reading alternation models for Japanese kanji, considering effects of: sequential voicing, sound euphony, vowel length and palatalization errors. #md5=90299bbd43533bf5d18127ca9f0b8c2d Platforms: *nix