Population Genetics

PGDSpider was built using the Java programming language as a conversion app for population genetics and genomics programs. The software facilitates the data exchange possibilities between programs for a vast range of data types (e.g. DNA, RNA, NGS, microsatellite, SNP, RFLP, AFLP, multi-allelic... Platforms: Windows

Seqlib is a Python module and application package for population genetics (and more). It allows processing, analyzing and simulating biological sequences. It is specifically designed for automated large-scale sequence analysis. Main features: * Fasta-centered input and output, format... Platforms: Mac

simuPOP is a general-purpose individual-based forward-time population genetics simulation environment. The core of simuPOP is a scripting language (Python) that provides a large number of objects and functions to manipulate populations, and a mechanism to evolve populations forward in time. Using... Platforms: Mac

GenoDive is a Mac-only program for population genetics analyses. The present version is a beta, which means that it will still contain bugs, and some analyses are not yet fully implemented. Please report any issues, bugs or praise that you may have to the author. This version should work on Mac... Platforms: Mac

LDhat is a C/C++ written project that was specially designed for the analysis of recombination rates from population genetic data. The following programs are included: · convert: Simple manipulation of DNA sequence data · pairwise: Parametric and nonparametric analyses of recombination ·... Platforms: Windows

Mesquite is software for evolutionary biology, designed to help biologists analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Because it is modular, the... Platforms: Mac

The C++ library for bioinformatics and artificial intelligence. Basic abstractions (like attribute, domain, state, etc.), DNA primitives (Nucleotide, Chain, EnergyNucleo, SecStruct, FoldedChain, FoldedPair, Codon, CodonAminoTable, Nussinov algorithm), population genetics primitives (Allele,... Platforms: Mac

World Population Monitor is a small software utility that displays information about the global population. This application comes in handy for all users who want to animate their desktop activity by adding a new Windows gadget, or simply want to stay informed about the world's population. The... Platforms: Windows 7, Windows

(p)IPHULA is a software that investigates parameters of population history based on a Monte Carlo simulation using the maximum likelihood framework. Further details on how to compile, install, run, and use this program can be found in the (p)IPHULA manual (PDF). Reference: The method is... Platforms: Mac

This widget simply calcuates the population of the world. It takes into consideration death rates and birth rates. Its a fun widget to watch the population of the earth increase! Platforms: Mac

The programs compute the bifurcation diagram for the cubic map and a realistic population dynamics model. The value of parameter r, when the cycle of period three appears, is indicated. As expected, for higher values of r, we observe chaotic behaviour. Both models are given in the problems?... Platforms: Matlab

Recodon is a population genetic simulator that generates samples of nucleotide and codon sequences from populations with recombination, migration and growth. The last version includes new codon models (M1, M7 y M8) and new output options. Platforms: Windows

This program calculates and plot the Microorganism population through the time. Platforms: Matlab

Multivariate normal simulations where sample mean and covariances match the respective population moments, refer toA. Meucci (2009), "Simulations with Exact Means and Covariances",Latest version of article and code available at http://symmys.com/node/162 Platforms: Matlab

This is a small module that enables the automatic population of the menu title field following changes made to the node title in an add or edit form. It is designed to save time with data entry. The feature can be enabled or disabled on a per-content type basis, and allows overriding the menu... Platforms: PHP

The following dissertation outlines one possible answer to this question, including an example game-like problem and a Genetic Algorithm (GA) inspired solution. The Genetic Algorithm described acts upon a population of game playing computer agents. Each agent contains a set of expressible... Platforms: Mac

Fraud detection toolto enable the analyst/researcher to determine if the distribution of a particular population of values, e.g. transaction amounts, comply with that which would be expected using Benfords Law. Six tests: Test first 1,2 or 3 digits, last 1 or 2 digits or second digit... Platforms: Windows

Queen Mystra has once again decended on the peacefull town of safekeep on driven out the last of the civilian population. only you, your trusty shotgun and the scurge of evil remanin, and no one is going to push you around. Platforms: Windows

Screensaver showing the size of the world population! See how many people join us every second. Population growth and population count variables are adjustable. Option: you can also run it without installing. Platforms: Windows

The aim of this experimental Linux distribution is to provide to RKC students andto the student population at large an operating system which is easy to install and use and which provides an alternative to the traditional commercial operating systems ;) Why Slackware as a base? As they... Platforms: *nix