Pdb

This utility was developed to be a small tool that will allow you to browse PDB files. PDB files are Windows Debug symbol files. It lists the symbols found in the file in a tree, and attempts to group them by type. Populating the entire view can be a little slow as it happens in the background,... Platforms: Windows

The Protein Data Bank (PDB) was established in 1971 as a repository of the atomic coordinates of protein structures (Bernstein et al., 1997). It has since outgrown that role, proving invaluable not only to the research community but also to students and educators (Berman et al., 2002). WWW::PDB... Platforms: *nix

User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files Platforms: Windows, Mac, Linux

PHP-PDB is a set of PHP classes that manipulate Palm OS databases. It lets you read, write, alter, and easily use data that is meant to be sent to or retrieved from a handheld. It requires PHP 4.0.1 or later, but due to security problems with PHP 4, you should have version 4.1.2 or patch your... Platforms: Windows, Mac, *nix, PHP, BSD Solaris

pDB is a collection of PHP classes that implement a file based embeddable SQL database engine. It was written in pure PHP and does not require any special extension or external resource. So, it can be distributed with any plain PHP application.pDB class works by storing the database tables in... Platforms: PHP

DiddleView is a simple and easy-to-use tool created in order to help the user display and exports images from PDB files. The PDB files must be created by the PalmOS Diddle and DiddleBug Palm applications. You can also use it to export individual images to JPEG files. Platforms: Windows

Simple Palm Doc Convertor is a simple and easy to use application that is capable of converting simple documents in/from: Palm Doc (pdb) file Text File Microsoft Word (docx) file for WindowsAll Platforms: Windows

The Python debugger has not the bash-like tab completion that you can add to the interpreter. Fortunately pdb's interactive prompt is an instance of Cmd, so you can write our own completion function. Platforms: Windows, Mac, *nix, Python, BSD Solaris

This is a simple Database Management System written in PHP.With this DBMS if you can't afford an MySQL hosting you can create a site using this DBMS to store data. Simple and Easy to use. Platforms: PHP

PDB wrapper designed for debugging rpc server code. Initial support is for RPyC, Pyro, and SimpleXMLRPCServer Platforms: *nix

Winpdb project is an advanced python debugger, with support for smart breakpoints, multiple threads, namespace modification, embedded debugging, encrypted communication and speed of up to 20 times that of pdb. Well, actually rpdb2 is the advanced debugger and Winpdb is its GUI, and I am their... Platforms: *nix

Extended Python Debugger is a complete debugger for Python than the stock pdb.py debugger. It supports a "restart" command and stack traces that show fewer ?s and give better information for exec statements. Stepping/nexting skips over method/function "defs". It tries to follow gdbs command... Platforms: *nix

PorDiBle is an application to convert between text documents and Palm DOC files. Text files can be dropped onto PorDiBle and will be converted to a compressed .pdb file which can be read by any one of a myriad of Palm ebook readers, such as SmartDoc, TealDoc and iSilo. Conversely, dropping a DOC... Platforms: Mac

Online database converter allows you to convert dbf files to csv, sql, xml, xls, mdb, pdb, html, excel, access formats and vise versa. It displays command line parameetrs in WYSIWYG mode, allows you to select source files and a target file or folder, the conversion direction and then transfers... Platforms: Windows, Mac, Other, Pocket PC, Android, BlackBerry, iPhone, iPod, iTouch, Palm

Handy shell for DBF converters allows you to convert dbf files to csv, sql, xml, xls, mdb, pdb, html, excel, access formats and vise versa. It displays command line parameetrs in WYSIWYG mode, allows you to select source files and a target file or folder, the conversion direction and then... Platforms: Windows

PDB2PQR is a Python software package that automates many of the common tasks of preparing structures for continuum electrostatics calculations, providing a platform-independent utility for converting protein files in PDB format to PQR format. Platforms: Windows, Mac, Linux

Prodar is a search application that queries the PDB for candidate structural alignments. The input to the search is a protein backbone structure read from a standard (text) PDB file, and the results returned are based solely on structural similarity of the backbone without any regard to sequence... Platforms: Windows, Mac

PSIMAP is the Protein Structural Interactome MAP, a map of all the domain level protein-protein interactions in the Protein Data Bank (PDB). PSIsoft is an archive of the software used to generate and analyse PSIMAP. Platforms: Windows, Mac, Linux

Converts basic Delicious Library data into a Palm PDB for the free List database application. Currently there's no real customization possible other than hardcoding in the script, but that will be coming in future releases. Note that this is not a Palm conduit; edits on the Palm are lost when a... Platforms: Mac, Palm Desktop, Delicious Library

MayaChemTools is a collection of command line Perl scripts to work with SD files, CSV/TSV text files, Sequence/Alignments files, PDB files, and databases: - splitting, joining, merging, and sorting SD and text files; merging text files into SD files; splitting SD files into MDL MOL files; -... Platforms: Windows, Mac, *nix, Perl, BSD Solaris