Outfile

Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db... Platforms: *nix

ExploitMyUnion is written in Python and has a PyQt user interface. Here are some key features of "ExploitMyUnion": ?*A* Injection via GET/POST/COOKIE. ?*A* Quoted injections support. ?*A* HTTP proxy support. ?*A* SQL 'load_file()' function support. ?*A* SQL 'INTO OUTFILE' statement support.... Platforms: Mac

mubench is an in-depth, low-level benchmark for x86 processors. Its primary goal is to provide useful information for people who optimize assembly code and for people who write compilers. mubench project measures latency and throughput for each individual instruction (sometimes several forms of... Platforms: *nix

Bio::Tools::Run::PiseApplication::charge is a Perl module. Bio::Tools::Run::PiseApplication::charge Bioperl class for: CHARGE Protein charge plot (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/charge.html for available values): charge (String) init... Platforms: *nix

SVG::SVG2zinc is a Perl module to display or convert svg files in scripts, classes, images... SYNOPSIS use SVG::SVG2zinc; &SVG::SVG2zinc::parsefile(file.svg, Backend,file.svg, -out => outfile, -verbose => $verbose, -namespace => 0|1, -prefix => string, ); # to generate a Perl script:... Platforms: *nix

PDL::IO::Misc is a Perl module with misc IO routines for PDL. rcols() Read ASCII whitespaced cols from a file into piddles and perl arrays (also see "rgrep()"). There are two calling conventions - the old version, where a pattern can be specified after the filename/handle, and the new... Platforms: *nix

AlignAid is a Perl module that easily run sequence alignments locally or on a cluster. SYNOPSIS use AlignAid; # create an AlignAid object # a single, locally run blast job is the default my $job = AlignAid->new( db => my_blast_db, dir => $dir, fasta => my_query.fa, prog_args => V=20... Platforms: *nix

XMLNews::HTMLTemplate is Perl module for converting NITF to HTML. SYNOPSIS use XMLNews::HTMLTemplate; my $template = new XMLNews::HTMLTemplate(); $template->readTemplate("mytemplate.html"); $template->applyTemplate("output.html", "story.xml", "story.rdf"); NOTE: this module requires... Platforms: *nix

MP3 Report Generator is a customizable program to scan a list of (sub)directories, creating a report from an HTML template. Also calculates various statistics and each songs playing time. Supports ID3 and ID3v2 tags. All options can be configured through the command line, see mp3report.pl... Platforms: *nix

ETTERLOG is a utility for Network Lan (SWITCH) for file .ECI and .ECP. (Ettercap program). Etterlog is the log analyzer for logfiles created by ettercap. It can handle both compressed (created with -Lc) or uncompressed logfiles. With this tool you can manipulate binary files as you like and... Platforms: *nix

Bio::Tools::Run::PiseApplication::freak is a Perl module. Bio::Tools::Run::PiseApplication::freak Bioperl class for: FREAK Residue/base frequency table or plot (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/freak.html for available values): freak... Platforms: *nix

VCShell is a command line interface for VCS::Lite::Repository. SYNOPSIS B< add > element|repository [element|repository...] B< remove > name [name...] B< ci >|check_in name [name...] B< co >|check_out parent_repository B< commit > B< update > B< cd > repository B< fetch > name@@gen... Platforms: *nix

TiVo File Decoder software converts a .TiVo file (produced by the TiVoToGo functionality on recent TiVo software releases) to a normal MPEG file. This has the same functionality as using TiVos supplied DirectShow DLL on Windows with a tool such as DirectShowDump, but is portable to different... Platforms: *nix

XML::ApacheFOP is a Perl module that can access Apache FOP from Perl to create PDF files using XSL-FO. SYNOPSIS use XML::ApacheFOP; my $Fop = XML::ApacheFOP->new(); # create a PDF using a xml/xsl tranformation $Fop->fop(xml=>"foo.xml", xsl=>"bar.xsl", outfile=>"temp1.pdf") || die "cannot... Platforms: *nix

Simple Metronome (simetro) is a console program that provides basic metronome functions and supports accent patterns. If all you want is a 100 bpm metronome, do this: ../simetro 100 9 | ecasound -f:s16,2,44100,i -i:stdin A sightly fancier example would use simetro like this: ./simetro 240... Platforms: *nix

MySQL PHP to PostgreSQL is an application that takes a php page that uses mysql calls and changes them into PostgreSQL calls. This allows any website (if it converts properly) that was written in PHP for MySQL to run as a website written to run on PostgreSQL. - Step 1: Download and uncompress... Platforms: *nix

Audio::AMR::Decode is a Perl extension do decode .amr files. SYNOPSIS use Audio::AMR::Decode; Audio::AMR::Decode::amr2raw(infile.amr, outfile.pcm); This module will attempt to decode an amr encoded audio file to a raw pcm audio encoded file. The package contains C-source files for the... Platforms: *nix

FrameMaker::FromHTML is a Perl class to convert HTML file to FrameMaker MIF. SYNOPSIS use base FrameMaker::FromHTML; use strict; my ($infile, $outfile); $infile = shift; ($outfile = $infile) =~ s/.htm[l]*$/.mif/; # Insert routine to validate HTML -- eg, use HTML-Tidy # VERY... Platforms: *nix

Bio::AlignIO::bl2seq is a bl2seq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class, as in: use Bio::AlignIO; $in = Bio::AlignIO->new(-file => "inputfilename" , -format => bl2seq); $aln = $in->next_aln(); This object can create... Platforms: *nix

RC-Crypt is a program to keep your data safe. It is an easy to use command line program that encrypts your data. It works with big and little endian hardware, and has been tested on Linux, HPUX and Solaris. It uses the rc5 algorithm, which has proved almost impossible to crack with key sizes of... Platforms: *nix