Ontology Philosophy

Module::Install::Philosophy Perl module contains the concepts behind Module::Install. SYNOPSIS This document describes the personal philosophy behind the creation of CPAN::MakeMaker (the predecessor of Module::Install). The views expressed here belong to Brian Ingerson; if they are not of...

Bio::Ontology::Relationship is a relationship for an ontology. SYNOPSIS $rel = Bio::Ontology::Relationship->new( -identifier => "16847", -subject_term => $subj, -object_term => $obj, -predicate_term => $pred ); This is a basic implementation of Bio::Ontology::RelationshipI. The...

Bio::Ontology::GOterm is a representation of GO terms. SYNOPSIS $term = Bio::Ontology::GOterm->new ( -go_id => "GO:0016847", -name => "1-aminocyclopropane-1-carboxylate synthase", -definition => "Catalysis of ...", -is_obsolete => 0, -comment => "" ); $term->add_definition_references(...


Platforms: *nix

Bio::Ontology::Ontology is a standard implementation of an Ontology. SYNOPSIS use Bio::Ontology::Ontology; # create ontology object my $ont = Bio::Ontology::Ontology->new(-name => "OBF"); # add terms, relationships ... my $bp = Bio::Ontology::Term->new(-name => "Bioperl"); my $obf =...


Platforms: *nix

OntologyEngineI is a Perl interface a minimal Ontology implementation should satisfy. This describes the minimal interface an ontology query engine should provide. It intentionally doesnt make explicit references to the ontology being a DAG, nor does it mandate that the ontology be a...


Platforms: *nix

It is an application focused on the ontology modeling ot the experimental factors in ArrayExpress.The application is used also in the constructing of mappings to multiple existing domain specific ontologies, such as Disease Ontology.


Platforms: Windows, Mac, *nix, Perl, BSD Solaris

ORE (Ontology Rule Editor) is a platform-independent application to manage the use of inference rules defined on a model represented by an ontology. ORE offers a easy, well-guided and intiutive GUI to define and test these inference rules.


Platforms: *nix

The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.


Platforms: Windows, Mac, Linux

ONTODerm is a specialty specific ontology for dermatology to integrate dermatology with medical software systems.


Platforms: Windows, Mac, Linux

An open source common API tasks to query existing ontology resources in local files (OWL and OBO) as well as public repositories (Bioportal, OLS) using a standardised, uniform interface.


Platforms: Windows, Mac, Linux

ROO is an (OWL) ontology construction tool based on Protégé 4. ROO makes the ontology building process easier as it provides guidance about the steps involved and it allows to enter knowledge using an easy to learn controlled natural language.


Platforms: Windows, Mac, Linux

OpenSPM project consists of two parts: a general philosophy on and about most aspects of exploiting parallelism using general purpose compute resources, and a comprehensive, customizable software package based on the aforementioned philosophy.. Main web-page of MBA Sciences, Inc.


Platforms: *nix

Phenex is an application for annotating character matrix files with ontology terms. Character states can be annotated using the Entity-Quality syntax for ontologically describing phenotypes. In addition, taxon entries can be annotated with identifiers from a taxonomy ontology. Phenex saves...


Platforms: Windows

A philosophical version of snake that is bound to bring a smile to your face. Play on 5 different levels, helping Wittgenstein to eat apples in order to engorge himself. Control the snake using the Up, Down, Left and Right keys. Make sure that you dont overlap the snake or you will have to...


Platforms: Windows

Alignment API is a development tool that allows various ontology matchers to share the same format and interface for accessing matching results. Using ontologies is the privileged way to achieve interoperability among heterogeneous systems within the Semantic web. However, as the ontologies...


Platforms: *nix

There are so many different media players out there, why bother to try yet another? That's a no-brainer; none of them fully satisfy your needs. We believe you think like we do, that a really good media player should not only be able to play all the media files in your library, but also be simple...


Platforms: Windows

swpkg project is a collection of small tools based on a fairly simple philosophy and designed to simplify the management of third party software packages including their inter-dependencies. These tools cover every aspect of building, installing and maintaining software packages and include the...


Platforms: *nix

GO::Model::Term is a term or concept in an ontology. SYNOPSIS # From a file use GO::Parser; my $parser = new GO::Parser({handler=>obj}); # create parser object $parser->parse("gene_ontology.obo"); # parse file -> objects my $graph = $parser->handler->graph; # get L object my $term =...


Platforms: *nix

Prot+eg+e is an ontology editor and a knowledge-base editor.Prot+eg+e is also an open-source, Java tool that provides an extensible architecture for the creation of customized knowledge-based applications.


Platforms: Mac

FluentEditor for OWL is comprehensive tool for editing and manipulating complex ontologies using Controlled Natural Language. Fluent editor provides alternative to XML-based OWL editors that is better suitable for human users. It's main feature is using Controlled English as a knowledge...


Platforms: Windows