Ontology Extraction

Key Concepts Extraction was specially developed in order to help you perform key-concept extractions from ontologies. In order to use the KCE API you have to import the available JAR packages into your project. The packages you have to import are: · kce.jar · taxonomy.jar ·... Platforms: Windows

Bio::Ontology::Relationship is a relationship for an ontology. SYNOPSIS $rel = Bio::Ontology::Relationship->new( -identifier => "16847", -subject_term => $subj, -object_term => $obj, -predicate_term => $pred ); This is a basic implementation of Bio::Ontology::RelationshipI. The... Platforms: *nix

Bio::Ontology::GOterm is a representation of GO terms. SYNOPSIS $term = Bio::Ontology::GOterm->new ( -go_id => "GO:0016847", -name => "1-aminocyclopropane-1-carboxylate synthase", -definition => "Catalysis of ...", -is_obsolete => 0, -comment => "" ); $term->add_definition_references(... Platforms: *nix

Bio::Ontology::Ontology is a standard implementation of an Ontology. SYNOPSIS use Bio::Ontology::Ontology; # create ontology object my $ont = Bio::Ontology::Ontology->new(-name => "OBF"); # add terms, relationships ... my $bp = Bio::Ontology::Term->new(-name => "Bioperl"); my $obf =... Platforms: *nix

OntologyEngineI is a Perl interface a minimal Ontology implementation should satisfy. This describes the minimal interface an ontology query engine should provide. It intentionally doesnt make explicit references to the ontology being a DAG, nor does it mandate that the ontology be a... Platforms: *nix

PDF Image Extraction Wizard will help you extract pictures from PDF (Adobe Acrobat) documents and save them as individual image files. You can choose to extract all pictures in a single click, or limit to specific pdf pages and/or image sizes. Images are extracted straight from the PDF document... Platforms: Windows

Office Image Extraction Wizard is a useful program that allows you to easily extract images from various "office type" documents and store them as normal image files. Images are extracted in their native format, with no images processing or re-saving being performed. Get Office Image Extraction... Platforms: Windows, Windows Vista, 7, 7x64

It is an application focused on the ontology modeling ot the experimental factors in ArrayExpress.The application is used also in the constructing of mappings to multiple existing domain specific ontologies, such as Disease Ontology. Platforms: Windows, Mac, *nix, Perl, BSD Solaris

ORE (Ontology Rule Editor) is a platform-independent application to manage the use of inference rules defined on a model represented by an ontology. ORE offers a easy, well-guided and intiutive GUI to define and test these inference rules. Platforms: *nix

Data Doctor PAD (Portable Application Description) XML information extraction utility is freeware software tool for data retrieval from XML PAD enabled websites for website promotion. Tool helps to provide services for fetching and archiving all information of online PAD XML URLs list from one or... Platforms: Windows

BlogTEX is an ad-hoc blog posts extraction algorithm written in Java for TREC Blog08 dataset. It includes an optimized sentence model for clearly identifying sentence boundaries in each blog post. Its output can be customized using its config file. Platforms: Windows, Mac, Linux

The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more. Platforms: Windows, Mac, Linux

The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface Platforms: Windows, Mac, Linux

OMEN (On-demand Metadata Extraction Network) is a tomcat based system that allows external users (music information researchers) to request from participating libraries the extraction of features from music archives without violating copyright. Platforms: Windows, Mac, Linux

ONTODerm is a specialty specific ontology for dermatology to integrate dermatology with medical software systems. Platforms: Windows, Mac, Linux

An open source common API tasks to query existing ontology resources in local files (OWL and OBO) as well as public repositories (Bioportal, OLS) using a standardised, uniform interface. Platforms: Windows, Mac, Linux

Phoenix is an information extraction engine written in java. Controlled by rules (declared in xml), it extracts information form any XML document (unstructured XHTML/OpenOffice documents). Supports XPath, additional conditions and top-down decomposit Platforms: Windows, Mac, Linux

The Information Extraction Plugin allows the use of information extraction techniques within RapidMiner. It can be seen as an interface between natural language and IE- or datamining-methods, by extracting interesting information out of documents. Platforms: Windows, Mac, Linux

ROO is an (OWL) ontology construction tool based on Protégé 4. ROO makes the ontology building process easier as it provides guidance about the steps involved and it allows to enter knowledge using an easy to learn controlled natural language. Platforms: Windows, Mac, Linux

T-Rex (Trainable Relation Extraction) is a highly configurable machine learning-based Information Extraction from Text framework, which includes tools for document classification, entity extraction and relation extraction. Platforms: Windows, Mac, Linux