Multistage Cluster Sampling

Document clustering project is a data mining suite to cluster a document set. This set of tools was implemented from a series of papers: "Clustering Web Pages Semantically using Combinatorial Topology", "Data mining using granular computing", and "A fast association rule algorithm based on bitmap... Platforms: *nix

Statistics::CalinskiHarabasz is a Perl extension to the cluster stopping rule proposed by Calinski and Harabasz (C&H). SYNOPSIS use Statistics::CalinskiHarabasz; &ch(InputFile, "agglo", 10); Input file is expected in the "dense" format - Sample Input file: 6 5 1 1 0 0 1 1 0 0 0 0 1 1... Platforms: *nix

Bio::Tree::Compatible is a Perl module for testing compatibility of phylogenetic trees with nested taxa. SYNOPSIS use Bio::Tree::Compatible; use Bio::TreeIO; my $input = new Bio::TreeIO(-format => newick, -file => input.tre); my $t1 = $input->next_tree; my $t2 = $input->next_tree; my... Platforms: *nix

GEXEC is a scalable cluster remote execution system which provides fast, RSA authenticated remote execution of parallel and distributed jobs. It provides transparent forwarding of stdin, stdout, stderr, and signals to and from remote processes, provides local environment propagation, and is... Platforms: *nix

pam_imap is a PAM module that authenticates against a remote IMAP or IMAPS server. pam_imap program supports multiple servers, SSL, password caching, user blacklists (for admin users), and many configuration abilities. Examples of recommended use: 1) A lab of UNIX/Linux machines that would... Platforms: *nix

AlignAid is a Perl module that easily run sequence alignments locally or on a cluster. SYNOPSIS use AlignAid; # create an AlignAid object # a single, locally run blast job is the default my $job = AlignAid->new( db => my_blast_db, dir => $dir, fasta => my_query.fa, prog_args => V=20... Platforms: *nix

OpenRM Scene Graph is a scene graph API that implements fully piplined-parallelized multistage and multithreaded rendering, and uses OpenGL as a graphics platform for hardware acceleration. A scene graph model is a useful way to organize data for rendering in a way that is particularly... Platforms: *nix

ClusterControl project is a web-interface to simplify distributing and monitoring bioinformatics applications on Linux cluster systems. This software is based on a modular concept that enables integration of command-line oriented programs into the application framework of ClusterControl. The... Platforms: *nix

BioBrew Linux is an open source Linux distribution that is enhanced for life scientists. It is customized for cluster and bioinformatics computing. It automates cluster installation, includes all the HPC software a cluster enthusiast needs, and contains popular bioinformatics applications.... Platforms: *nix

Parallel MPI BZIP2 is a parallel implementation of the bzip2 block-sorting file compressor that uses MPI and achieves significant speedup on cluster machines. The output of this version is fully compatible with bzip2 v1.0.2 or newer (ie: anything compressed with mpibzip2 can be decompressed... Platforms: *nix

LinuxBIOS project is aimed at replacing the normal BIOS with a little bit of hardware initialization and a compressed Linux kernel that can be booted from a cold start. The project was started as part of clustering research work in the Cluster Reseach Lab at the Advanced Computing Laboratory at... Platforms: *nix

MOSIXVIEW is a GUI for managing openMosix-Cluster. Everybody is invited to download and use it (at your own risk and responsibility). You can adjust the main parameters of your openMosix-Cluster. It is a front-end for the "mosctl"-Commands. The "speed"of each node can be changed whith... Platforms: *nix

MATtool project a powerful UNIX configuration and monitoring tool enables large cluster management. Solutions based tools enable administrators to get on with the more important jobs. MAT is an easy to use network enabled UNIX configuration and monitoring tool. It provides an integrated tool... Platforms: *nix

openMosix is a Linux kernel extension for single-system image clustering. This kernel extension turns a network of ordinary computers into a supercomputer for Linux applications. Once you have installed openMosix, the nodes in the cluster start talking to one another and the cluster adapts... Platforms: *nix

LAMP Application Server project is a combination of common open source tools that provides a unified system from which administrators, developers, and other parties can manage a large application cluster. The underlying platform is LAMP based. Whats New in This Release: - Fixed vhost config... Platforms: *nix

pmacct is a small set of passive network monitoring tools to measure, account and aggregate IPv4 and IPv6 traffic; aggregation revolves around the key concept of primitives (VLAN id, source and destination MAC addresses, hosts, networks, AS numbers, ports, IP protocol and ToS/DSCP field are... Platforms: *nix

pmacct is a small set of passive network monitoring tools to measure, account and aggregate IPv4 and IPv6 traffic; aggregation revolves around the key concept of primitives (VLAN id, source and destination MAC addresses, hosts, networks, AS numbers, ports, IP protocol and ToS/DSCP field are... Platforms: *nix

FreeHA is designed to provide a free, portable, and easy to use (compared to alternatives) program to run nodes in a high availability cluster. FreeHA will let you run a service (program), or group of services, on a computer, but have one or more others running in standby mode. The service can... Platforms: *nix

Config::File is a Perl module to parse a simple configuration file. SYNOPSIS use Config::File; my $config_hash = Config::File::read_config_file($configuration_file); read_config_file parses a simple configuration file and stores its values in an anonymous hash reference. The syntax of the... Platforms: *nix

Compute Portal Project is a portal project to produce a web based front end to a compute resource, such as a cluster, using PHP, mysql, and apache. The intent is to allow non-programmers to use complex programs through an intuitive interface. Whats New in This Release: - This is the third... Platforms: *nix