Molecular Visualization

PyMOL is a user-sponsored molecular visualization system on an open-source foundation. Please support development of this open, effective, and affordable software by purchasing an incentive copy, which is pre-built and comes with maintenance and support. PyMOL can interpret over 30 different... Platforms: Windows, Mac, Linux

BALLView is our standalone molecular modeling and visualization application. Furthermore it is also a framework for developing molecular visualization functionality. It is available free of charge under the GPL for Linux, Windows and MacOS. It provides fast OpenGL-based visualization of... Platforms: Windows

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. This project offers a flexible rendering engine and a powerful plugin architecture. The main concept behind Avogadro... Platforms: *nix

CMView is an intervative contact map visualization and analysis tool. The current version is 0.9.6 Please send feedback to stehr ?*A*t molgen.mpg.de Main features: * Combined contact map and 3D structure view (using PyMol) * Various im- and export options: PDB files, Online PDB, Image... Platforms: Mac

Libsball is a simple POSIX-based library for communicating with Spaceball 2003, 3000, 3003, and 4000 FLX six-degree-of-freedom motion control devices, via RS-232 serial ports on Unix-like systems. Spaceballs are excellent controllers for CAD/CAM, scientific visualization, and general 3-D VR... Platforms: *nix

VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running Mac OS X, UNIX, or Windows, is distributed free of charge, and includes source code. Platforms: Mac

MOPlot is a handy visualization application specially designed for fast molecular orbitals plotting from the outputs of the Gaussian 03/98/94, Molcas, Gamess/US quantum chemical calculation packages. This Molecular Orbital Plotting Program will prove to be easy-to-use and very efficient. MOPlot... Platforms: Windows, XP

XMMS Root Visualization Plugin is a little XMMS plugin wich can draw a spectrum analyzer directly to the background (root window) of X. Whats New in This Release: - changed code to get rid of gcc 4 compiler warnings - added alpha channel to all colors - rewrote configuration backend -... Platforms: *nix

Visualization in Geometric Knot Theory is a small, Java based application specially designed to help you create different interactive visualizations in geometric knot theory. Most of the software's options are available via the context menu of corresponding components and their toolbars and... Platforms: Windows

The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. Kitware, whose team created and... Platforms: Windows, Mac, Linux

Power Engineering Visualization VC++ Source Code Solutions UCanCode Softwareis a world-class Power Engineering Solutions provider with an established reputation for customer responsiveness and technical expertise. Our solutions stand behind thousands of T&D projects in over 40 countries around... Platforms: Windows

PMN Solution Visualization .NET/VC++ Source Code Kit -- Build Advanced Diagrams and Dashboards for Business Process Management (BPM) in minutes Business Process Modeling (BPM) is typically performed by business analysts who are seeking to improve process efficiency. Process oriented... Platforms: Windows

PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone! Platforms: Windows, Mac, BSD, Solaris, Linux

Hidden Markov models are used to describe the "stepping" behavior of molecular motors, as measured by single-molecule fluorescence techniques. Our HMM implementation is more versatile than the one described by Milescu, et al. Biophys. J. 91:3135-3150 and can be used as a "blind" step detector or... Platforms: Matlab

ORMA (Oligonucleotide Retrieving for Molecular Applications) is a series of integrated scripts in Matlab, which performs an accurate search of all the positions able to specifically discriminate one species among homologous ones. ORMA also performs an accurate selection of high-quality... Platforms: Matlab

The code in this submission describes how to download and install the Visualization Toolkit (VTK, www.vtk.org) and create a MATLAB mex file to interface with it.An example C++ mex file and code to build and run the mex file are included. Platforms: Matlab

This is the data set you will need to participate in the Data Visualization contest. For more information, refer to the rules posted here. http://www.mathworks.com/contest/datavis/rules.htmlYou can also follow the latest announcements on the contest blog here. http://blogs.mathworks.com/contest/ Platforms: Matlab

The EJS Molecular Dynamics model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated time step. For sufficiently small time steps dt,... Platforms: Mac

The EJS Molecular Dynamics Demonstration model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated Time step. For sufficiently small... Platforms: Mac

The Molecular Dynamics Adiabatic Piston model shows two gas samples within a horizontal cylinder that is divided by an insulated piston that moves without friction. It is a supplemental simulation for an article by Eric Gislason "A close examination of the motion of an adiabatic piston" in the... Platforms: Mac