Molecular Dynamics Newsgroup

A Kirchhoff elliptic vortex is a 2D elliptical region (or d-deDUpatchd-deDt) of uniform vorticity embedded in an inviscid, incompressible and irrotational fluid. G. Kirchhoff showed that these are exact solutions to the nonlinear Euler equations in 1876.Subsequently, A. E. H. Love analyzed the... Platforms: Matlab

NanoVis (beta version) allows to visualize any atomistic structure by reading a user defined file. The supported formats are "gen" and "xyz". There are two display modes: normal and "spacefill". In the zip file, with the .m file, there are two examples of structure and a file containing the atoms... Platforms: Matlab

A mass constrained to move on a rotating hoop is an excellent mechanical model of first- and second-order phase transitions. Although the minimum of the potential energy curve corresponds to the bottom of the hoop at low rotation frequency, a spontaneous symmetry breaking (cusp catastrophe)... Platforms: Mac

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. This project offers a flexible rendering engine and a powerful plugin architecture. The main concept behind Avogadro... Platforms: *nix

KNewz project is a binary newsgroup client for KDE4. I wrote it because there is no one client out there that does what I want it to. Planned features include automatic PAR2 checking (via kpart, whee), automatic unpacking of downloaded files, System tray support (trivial I know), DBUS support,... Platforms: *nix

PyODE is a set of open-source Python bindings for The Open Dynamics Engine, an open-source physics engine. PyODE also includes an XODE parser. Like ODE, PyODE may be distributed under the terms of either the GNU Lesser General Public License or a BSD-style license.. Platforms: *nix

PHPUsenet is a set of scripts that allow you to mirror a newsgroup in an SQL database. Users can read posts, browse, search, reply, and start new threads. Multiple newsgroups are supported for one frontend. The posting facility can be password protected. Whats New in This Release: - Fixes... Platforms: *nix

Newsd is a standalone local NNTP news server for private newsgroup serving on a single server. It is useful for serving private newsgroup(s) to an intranet or the Internet and can act as a simple mail gateway, however it does not interface with other news servers and cannot manage distributed... Platforms: *nix

Bio::MCPrimers is a Perl module to create molecular cloning PCR primer pairs for a given gene so that the gene can be directionally inserted into a vector. Solver is generic, restriction enzymes and their order in the vector are specified in the caller. XPORT SUBROUTINES sub find_mc_primers... Platforms: *nix

BALLView is our standalone molecular modeling and visualization application. Furthermore it is also a framework for developing molecular visualization functionality. It is available free of charge under the GPL for Linux, Windows and MacOS. It provides fast OpenGL-based visualization of... Platforms: Windows

PyMOL is a user-sponsored molecular visualization system on an open-source foundation. Please support development of this open, effective, and affordable software by purchasing an incentive copy, which is pre-built and comes with maintenance and support. PyMOL can interpret over 30 different... Platforms: Windows, Mac, Linux

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows... Platforms: Windows

MOPlot is a handy visualization application specially designed for fast molecular orbitals plotting from the outputs of the Gaussian 03/98/94, Molcas, Gamess/US quantum chemical calculation packages. This Molecular Orbital Plotting Program will prove to be easy-to-use and very efficient. MOPlot... Platforms: Windows, XP

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows... Platforms: Windows

Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA... Platforms: Windows

Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA... Platforms: Linux

Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA... Platforms: Mac

Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA... Platforms: Windows

PaDEL-Descriptor is a handy utility designed to perform molecular calculation. It calculates 797 descriptors (663 1D, 2D descriptors and 134 3D descriptors) and 10 types of fingerprints. Platforms: Windows

The perfect tool for collecting images from Usenet newsgroups. NIC can search one or more newsgroups for images by scanning each posted message. When a message contains image content, the image is downloaded to your computer. You control which newsgroups to search and you can filter out unwanted... Platforms: Mac