Model Selection

KaKs_Calculator adopts model selection and model averaging to calculate nonsynonymous (Ka) and synonymous (Ks) substitution rates, attempting to include as many features as needed for accurately capturing evolutionary information in protein-coding sequences. In addition, several existing methods... Platforms: Mac

PyML is an interactive object oriented framework for machine learning written in python. PyML focuses on kernel classifiers, providing tools for feature selection, model selection, and methods for assessing classifier performance. Platforms: *nix

nmr-relax is designed for the study of the dynamics of proteins or other macromolecules though the analysis of NMR relaxation data. It is a community driven project created by NMR spectroscopists for NMR spectroscopists. It supports exponential curve fitting for the calculation of the R1 and R2... Platforms: *nix

This program, BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. BayeScan is based on the multinomial-Dirichlet model. One of the simplest possible scenarios covered consists of an island model in... Platforms: Windows, Mac, Linux

Introduction to Stochastic Search and Optimization is an overview of the principles, algorithms, and practical aspects of stochastic optimization, including applications drawn from engineering, statistics, and computer science. The book may serve as either a reference book for researchers and... Platforms: Matlab

PyML is an interactive object oriented framework for machine learning written in Python. PyML focuses on SVMs and other kernel methods. It is tested on Linux and Mac OS X. Features?*A* * Classifiers: support vector machines, nearest neighbor, ridge regression * Multi-class methods... Platforms: Mac

The Unscrambler Online enables full utilization of PLSR and PCR models for prediction, and of PLS, PCR and PCA models for classification, developed in The Unscrambler software. The use of Unscrambler Online results in effective application of multivariate statistical approaches in process and... Platforms: Windows

Sagata Multiple Regression software offers the power of a professional regression package with the ease and comfort of a Microsoft Excel interface.Features include:Qualitative/Categorical Factors - often inputs or factors in model fitting are qualitative or categorical in nature, e.g., the type... Platforms: Windows

This application is an open-source machine learning program for supervised classification of patterns (vectors of measurements). PCP implements the following algorithms and methods: - Fisher's linear discriminant - dimensionality reduction using Singular Value Decomposition - Principal... Platforms: Windows, Mac, *nix, C/C++, BSD Solaris

XQF is a game server browser and launcher for Unix/X11 for many popular games such as the Quake series, Unreal Tournament series, Half-Life etc. XQF is a front-end to QStat, a program by Steve Jankowski and uses the GTK+ toolkit. Features Supports Americas Army, BF1942(wine), Descent 3, Doom... Platforms: *nix

In Model-in-the-Loop for Embedded System Test (MiLEST) the developed signal-feature d-deOCt oriented paradigm allows the abstract description of signals and their properties. It addresses the problem of missing reference signal flows as well as the issue of systematic test data selection.... Platforms: Matlab

Config::Model provides a framework to help in validating the semantic content of configuration data. Config::Model can also be used to provide a semantic check of options of a complex program like mplayer or transcode. How does this work ? Using this project, a typical configuration... Platforms: *nix

GO::Model::Term is a term or concept in an ontology. SYNOPSIS # From a file use GO::Parser; my $parser = new GO::Parser({handler=>obj}); # create parser object $parser->parse("gene_ontology.obo"); # parse file -> objects my $graph = $parser->handler->graph; # get L object my $term =... Platforms: *nix

Query-Oriented Model for XML is a lightweight XML processing framework for Java that promotes the use of XPath instead of Java code for consuming XML. The resulting code from Query-Oriented Model for XML, is simple and expressive with no meaningless objects and no meaningless parameters - just... Platforms: *nix

JSBSim Flight Dynamics Model is an open source flight dynamics model (FDM) that compiles and runs under many operating systems, including Linux, Apple Macintosh, Microsoft Windows, Linux, IRIX, Cygwin (Unix on Windows), etc. The FDM is essentially the physics/math model that defines the... Platforms: *nix

Yukatan data model project is the schema definition of the Yukatan webmail database. The PostgreSQL database structures defined in this file can be used as a backend store of an email message handling application. The database should be created with the "UNICODE" encoding to properly support... Platforms: *nix

Misfit Model 3D is an OpenGL-based 3D model editor that works with triangle-based models. Misfit Model 3D supports multi-level undo, skeletal animations, simple texturing, scripting, command-line batch processing, and a plugin system for adding new model and image filters. Complete online help... Platforms: *nix

File Selection Language (FSL) is a descriptive language for file selection. File Selection Language is used to selectively pick files from a directory structure. FSL is useful for selective backups, for instance. FSL uses glob patterns as the basic building block. For fine-tuning the... Platforms: *nix

XML Tree Object Model Parser is an easy to use XML parser designed to provide an easy and simple to use library for parsing XML configuration files. It is split into two components. The first one is the Parser itself, which uses J2SE 1.4 XML Parsing API, and the second one is what I call XML... Platforms: *nix

Easy Model Railroad Inventory is designed to inventory all of your model railroad rolling stock, locomotives and cars, the structures, electronic equipment, book collection. Once the information has been entered there are many ways to view, query, report, and graph what you own. In addition to... Platforms: Windows