Mike Holmes Bio

Bio::Location::CoordinatePolicyI is an abstract interface for objects implementing a certain policy of computing integer-valued coordinates of a Location. SYNOPSIS # get a location, e.g., from a SeqFeature $location = $feature->location(); # examine its coordinate computation policy print...

Bio::Phylo::Treedrawer::Svg is a Perl module that creates svg tree drawings. No serviceable parts inside. This module creates a scalable vector graphic from a Bio::Phylo::Trees::Tree object. It is called by the Bio::Phylo::Treedrawer object, so look there to learn how to create tree drawings....

Bio::NEXUS::NotesBlock is a Perl module that represents a NOTES block in a NEXUS file. Placeholding module for the Notes Block class..


Platforms: *nix

OntologyEngineI is a Perl interface a minimal Ontology implementation should satisfy. This describes the minimal interface an ontology query engine should provide. It intentionally doesnt make explicit references to the ontology being a DAG, nor does it mandate that the ontology be a...


Platforms: *nix

Bio::NEXUS::SetsBlock is a Perl module that represents SETS block of a NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::SetsBlock($block_type, $block, $verbose); Parses Sets block of NEXUS file and stores Sets data. METHODS new Title : new Usage : $block_object = new...


Platforms: *nix

Bio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats. SYNOPSIS use Bio::OntologyIO; # do not use directly -- use via Bio::OntologyIO my $parser = Bio::OntologyIO->new ( -format => "simplehierarchy", -file => "pathology_terms.csv",...


Platforms: *nix

Bio::ClusterI module is a cluster Perl interface. SYNOPSIS # see the implementations of this interface for details but # basically my $cluster= $cluster->new(-description=>"POLYUBIQUITIN", -members =>[$seq1,$seq2]); my @members = $cluster->get_members(); my @sub_members =...


Platforms: *nix

Bio::NEXUS::MatrixBlock is a Perl module that provides functions for handling blocks that have matrices. SYNOPSIS This module is the super class of Characters, Unaligned, and Distances block classes, and indirectly it is a super-class of Data and History blocks, which are both sub-classes of...


Platforms: *nix

The module includes a sidebar block listing the names of the users with biographies. A tiled vcard view that includes avatars can be displayed with theme_bio_tiles(). In order to display a list of biographies the function bio_list() can be called.InstallationUnpack in your modules folder...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

Any node-type can be assigned as the bio or Bio module can provide its own node type. The bio can display on the users' profile pages and/or it can add "View [username]'s [Bio]" links to nodes.Installation - Unpack in your modules folder (usually /sites/all/modules/) and enable under Administer >...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

Mops is a full featured, stand-alone development environment for programming the Macintosh written by Mike Hore. Inspired by Smalltalk and the commercial language Neon, Mops is based on Forth with extended object-oriented features such as multiple inheritance, early and late binding, persistent...


Platforms: Mac

Features - Listing profiles by role - Restricting access to profiles by both who is viewing the profile and who owns the profileInstallation - Unpack in your modules folder (usually /sites/all/modules/) and enable under Administer > Site Building > Modules.  Requirements: - Drupal 5.x - Drupal...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

The program is used for identifying if two different texts (e.g. forum comments, e-mail messages, office memos, etc.) are written by the same person, after comparing them. The result is presented as the probability percentage of that event on a 100 point scale. Despite the seeming simplicity,...


Platforms: Windows

Bio-Formats was specially designed as an accessible Java-based tool that can be used for reading and writing life sciences image file formats. It is capable of parsing both pixels and metadata for a large number of formats, as well as writing to several formats.


Platforms: Windows

Simply adds a author bio after every post automatically. You can integrate Twitter and Facebook profiles.Installation :Step 1. Download the Plugin from http://wp-adm.inStep 2. Upload it in you wp-content/plugins dirrectory.Step 3. Activate from Admin panel.Step 4. Write a proper author bio for...


Platforms: PHP

MESH2D is a toolbox for the generation and manipulation of unstructured triangular meshes in MATLAB. High quality meshes are generated automatically using user defined geometries and shapes.These meshes are suitable for subsequent FEM or FVM analysis.MESH2D will automatically adapt the element...


Platforms: Matlab

The Chemistry Development Kit (CDK) is a scientific, LGPL-ed library for bio- and cheminformatics and computational chemistry written in Java.


Platforms: Windows, Mac, Linux

This is an embarrassing simple hack of the Store Pickup Module originally by dion and mike to allow local delivery to be an option in the customer's Shipping Selections. It allows a store customer to request local delivery and allows you, as store owner, to set a Delivery Charge for this service....


Platforms: Windows, *nix, PHP, BSD

For interactive clustering and visualization, Cluster and TreeView by Mike Eisen are great. XCluster by Gavin Sherlock solves the problem of clustering large numbers of files. Now slcview allows you to script generation of cluster and tree images.


Platforms: Windows, Mac, Linux

The Author Bio Widget displays some basic information about the author of the page or post being viewed.The bio includes the author's gravatar, nickname and bio information as set in the user profile. The author's name will also link to the main blogroll filtered by content from the same...


Platforms: PHP