Ion Solvation

APBSmem is a Java-based graphical user interface for Poisson-Boltzmann electrostatics calculations at the membrane. APBS version 1.2.0 or later is required. Features . Protein solvation . Ion solvation . Gating charge calculations Platforms: *nix

APBSmem is a handy, Java-based graphical user interface specially designed to help you with Poisson-Boltzmann electrostatics calculations at the membrane. The Poisson-Boltzmann equation or PB describes the electrostatic environment of a solute in a solvent containing ions. Platforms: Windows

APBS was designed as a software package for modeling biomolecular solvation through solution of the Poisson-Boltzmann equation or PBE. PBE is one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum... Platforms: Windows

C-Library & Matlab Toolbox implement a numerical solution of Poisson equationdiv(e*grad(u))=fin Cartesizan 3D coordinates with respect to steeply varying dielectrical permittivity e. Library uses regular rectangular grid with mixed boundary conditions, FVM-based equation discretization and... Platforms: Matlab

MRMer reads an mzXML file and infers precursor-ion/product-ion relationships. It displays elution curves of the product ions and allows the user to select or deselect them as candidates for MRM-based assays. MRMer also displays the elution curve of the precursor ions when MS1 scans are present... Platforms: Windows

aufbau is a simple, Command-Line-based tool that was specifically designed to create electron configurations for an atom, molecule or ion. It is built so it follows the "Aufbau" principle. The input has to be a number between 1 and 53. Platforms: Windows, Windows Vista, 7

DescExt is an extension to the Windows 9x/ME or Windows NT 4/2000 explorer to show 4DOS descriptions. It hooks into the context menu and the property sheet of any file or folder of any explorer window. You can edit the description in the Description tab of the property sheet. If there is a... Platforms: Windows

To tidy, sort, prune and dedup a JP Software Take Command/TCC/4NT/4DOS hidden descript.ion file. These files are used by the DESCRIBE utility to track what your various files are for. First make the directory containing the usually-hidden descript.ion file current. e.g. C: cd env Then invoke the... Platforms: Windows, Mac, Java, Linux, Unix

A library contaning amorphous track based algorithms and auxiliary routines for the prediction of detector response and radiobiological cross-sections in heavy charged particle beams. libamtrack is also designed for research in proton and ion radiotherapy and dosimetry. Platforms: Windows, 2K, XP, Windows Vista, 7

AddOrSubtract is a simple math's tutor to teach your child how to do simple addition or subtract ion mathematics. Do as many odd or even quiz questions as you want to. Specify the top and bottom number ranges to increase or decrease difficulty. AddOrSubtract keeps a running score of how many... Platforms: Windows

ACCORD is a C library for composition of scanning electron or helium-ion microscope images with correction of drift. It produces significantly more accurate images than the traditional imaging techniques and also provides drift trajectories. Platforms: Windows, Mac, BSD, Linux

JBioFramework (JBF) is a set of simulations of three different chemical separations applications (ion exchange chromatography, 1D electrophoresis and 2D electrophoresis) that are frequently used in chemistry, biochemistry and proteomics research. Platforms: Windows, Mac, Linux

A Mass Spectrometer B and Y ion labeling software for proteomics researchers. Peptide sequences can be read from a library and b and y ions will be calculated and sequence can be manipulated by the user (chem. mod. or amino acid mod.) Platforms: Windows, Mac, Linux

The set of files was developed to produce dependencies of plasma magnetic characteristics on acceleration time by tabular data. The example is brief illustration of visual data representation. The basic physical functions of acceleration process are shown: magnetic induction, plasma resistance,... Platforms: Matlab

Hotstop is scientific software that allows to extract experimental ion stopping force curves from RBS spectra (as well as to stimate uncertainities) It uses Simulated Annealing and Bayesian Inference algorithms. Platforms: *nix

pekwm is a window manager that once up on a time was based on the aewm++ window manager, but it has evolved enough that it no longer resembles aewm++ at all. It has a much expanded feature-set, including window grouping (similar to ion, pwm, or fluxbox), autoproperties, xinerama, keygrabber that... Platforms: *nix

ImgDescribe allows you to edit some of the EXIF metadata that are stored with an image from a digital camera. WIth ImgDescribe you can change description, author and copyright fields in a single image or in a list of images. ImgDescribe can use simple text file or a descript.ion file prepared... Platforms: Windows

For the set of chemical elements (Ba, Sr, Ca and so on) there is a function enabling to print capital and small letters without switching by "Shift" and "Caps Lock" keys. Figures specifying the number of atoms in chemical formula (H2SO4) are automatically made subscripts, and atom's oxidation... Platforms: Windows

aewm is a minimalist window manager for X11. It has no nifty features, but is light on resources and extremely simple in appearance. It should eventually make a good reference implementation of the ICCCM. A few separate programs are included to handle running programs, switching between... Platforms: *nix

Distrust is a Firefox extension which hides surfing trails that the browser leaves behind. AKA Private Browsing. Once turned on this extension monitors FireFox for its activities. Once turned off Distrust will remove history items cache and cookies that were used during the distrust... Platforms: *nix