Intrinsic Pathway

CytoSEED was built as a Cytoscape plugin that can help you view, manipulate and analyze metabolic models created using the Model SEED. The CytoSEED plugin was designed in order to enable users of the Model SEED to create informative visualizations of the reaction networks generated for their...

The PHP JPEG Metadata Toolkit is free and Open Source PHP Project designed to allow manipulation of many types of metadata that reside in a JPEG image file. Five types of metadata that can be accessed by this project:- EXIF, DCF & TIFF/EP including makernotes: Contains Digital Camera Settings....

This software has been realized at the CNS Technology Lab at Boston University - http://techlab.bu.edu. The main author of this software is Chaitanya Sai ( http://techlab.bu.edu/members/sai/ ).CONFIGR (CONtour FIgure GRound) is a computational model based on principles of biological vision that...


Platforms: Matlab

TYPECAST and TYPECASTX are mex functions intended to mimic the MATLAB intrinsic typecast function with extensions. These C-mex versions of typecast differs from the intrinsic typecast in the following important aspects: Intrinsic typecast------------------Type of copy: Deep Data CopyAllows...


Platforms: Matlab

This package provides filesystem synchronization utilities for Zope 3. It is used by the zope.app.fssync package. Filesystem Synchronization This package provides an API for the synchronization of Python objects with a serialized filesystem representation. This API does not address security...


Platforms: *nix

A Tool that manages Pathway Retrieval, Visualization and Analysis. Import a Gene or Protein Set from any Excel file. Find matching Pathways from KEGG. Integrate, visualze and analyze your Data in Seconds with interactive Force-directed Layout .


Platforms: Mac

MetMAP is a MATLAB Toolbox for Metabolical Modeling, Analysis and oPtimization (Met. M. A. P.).You can use this package to study metabolical systems from a theoretical point of view, analysing the pathway's structure and dynamics, but you can also use it for biotechnological purposes, evaluating...


Platforms: Matlab

The x86 Open64 compiler system is a high performance, production quality code generation tool designed for high performance parallel computing workloads. The x86 Open64 environment provides the developer the essential choices when building and optimizing C, C++, and Fortran applications targeting...


Platforms: *nix

SVG support is one of the most requested features for . There are two options, either SVG import for manipulating SVG graphics within as described in Issue:2497, or embedding SVG graphics "display-only" within documents as described in Issue:49991. Both options have their intrinsic benefits and...


Platforms: *nix

ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics. The input for ProDy is the atomic coordinates of...


Platforms: *nix

PathVisio is a tool for displaying and editing biological pathways. In a sense PathVisio lets you draw pathways as you would in any drawing program, like PowerPoint or Photoshop. But the difference is that PathVisio can understand the biological context of a pathway, because you can link...


Platforms: Mac

GeXpert is an expert system that can be used for genetics and metabolic pathway analysis. GeXpert can help Biotechnologists do their work faster, reducing the time required for performing, analyzing and storing the results of Bioinformatics research.


Platforms: *nix

Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner. Features . Redesigned pathway editor . Several examples embedded in the application. Search for example1 ... example6 (use the "Participate...


Platforms: *nix