Hydrofluoric Acid

MatrixGen is a Bioinformatics application used to generate scoring matrices from analysis of aligned Amino Acid and DNA data sets. These matrices can then be used by Clustal to generate more accurate alignments. Based upon the Henikoff BLOSUM method.

Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.

SIGOF (Security Information Graphics Oriented Forensic) aims at synthetizing security log, stored in a acid/base database schema, in order to provide a graphical / visual oriented security forensic and statistical analysis.


Platforms: Windows, Mac, Linux

A Buzz-like music-tracker and player using software synthetizing to generate acid-like sounds. Cutoff, resonance, decay, accent, distortion, reverb, delay, flanger, phaser and friends...


Platforms: Windows, Mac, Linux

A Mass Spectrometer B and Y ion labeling software for proteomics researchers. Peptide sequences can be read from a library and b and y ions will be calculated and sequence can be manipulated by the user (chem. mod. or amino acid mod.)


Platforms: Windows, Mac, Linux

MySQL Database Server is designed for enterprise organizations delivering business critical database applications. It gives corporate developers, DBAs and ISVs an array of new enterprise features to make more productive developing, deploying, and managing industrial strength applications. If you...


Platforms: Mac

Features:- Powerful menu management (javascript required)- News management- Zoom on a news until...- Archived status management (never, always, automatic)- Calendar management :week and month view, standard events, repetitive events with exceptions management , put event on home page, zoom on it-...


Platforms: PHP

CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.


Platforms: *nix

HSQLDB is a relational database engine written in Java, with a JDBC driver, conforming to ANSI SQL:2008. A small, fast, multithreaded engine and server with memory and disk tables, LOBs, transaction isolation, multiversion concurrency and ACID.


Platforms: Windows, Mac, Linux

dbdict is a dictionary-like object with SQLite backend. Python dictionaries are very efficient objects for fast data access. But when data is too large to fit in memory, you want to keep data on disk but available for fast random access. Here's a dictionary-like object which uses a SQLite...


Platforms: *nix

ADOdb is a database abstraction library for PHP. There is also a Python version.The PHP version currently supports an amazing number of databases, thanks to the wonderful ADOdb community: MySQL, PostgreSQL, Interbase, Firebird, Informix, Oracle, MS SQL, Foxpro, Access, ADO, Sybase, FrontBase,...


Platforms: PHP

Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution.


Platforms: Windows, Mac, Linux

BASILISK is a probabilistic model of the conformational space of amino acid side chains in proteins. Unlike rotamer libraries, BASILISK models the chi angles in continuous space, including the influence of the protein's backbone.


Platforms: Mac, Linux

BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments.


Platforms: Windows, Mac, Linux

Chlorite-iodide-malonic acid (CIMA) reaction gives rise to temporal oscillations. Governing equations and reaction scheme can be found in: (1) I. R. Epstein and J. A. Pojman, An Introduction to Nonlinear Chemical Dynamics, Oscillations, Waves, Patterns, and Chaos, Oxford University Press, Oxford,...


Platforms: Matlab

The program computes the tie lines, the operating and mixing points and the number of equilibrium stages using the Hunter and Nash graphical method of a liquid-liquid extraction problem. One feed of acetic acid (35 wt %) in water which flow rate = 1000 kg/hr is extracted using a solvent...


Platforms: Matlab

BitNami PostgreSQL module is a add-on for WAMPStack, LAMPStack, MAMPStack or RubyStack. This module ships and configure PostgreSQL database server and phpPgAdmin application to handle the administration of PostgreSQL over the Web. If you want to get a full Stack including Apache, PostgreSQL and...


Platforms: Mac

iso2l (ˈaisəutuːl, spoken isotool) is a software to calculate the isotopic distribution of a chemical formula or a amino acid chain.


Platforms: Windows, Mac, Linux

This function executes the analysis of the Acid-Base status of a blood sample given the pH and the pCO2 (in mmHg). The function plots a nomogram with 13, differently coloured, zones. The zone in which your data fall represents the Acid-Base status of your blood sample. By itself, the function...


Platforms: Matlab

Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid...


Platforms: Mac