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Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db...

oz2remind is a tool to convert OpenZaurus Opie calendar XML files to Remind format. Its a small but useful Perl script to convert the datebook.xml file used by the calendar app in OpenZaurus Opie to Remind format. About Remind: Remind is a sophisticated calendar and alarm program. It...

phpautotest is a tool for conducting automated regression tests on PHP-driven Web sites. Variable values as well as HTTP output can be tested. HTTP output is tested using regular expressions.. Get phpautotest at SourceForge.net. Fast, secure and free downloads from the largest Open Source...


Platforms: *nix

Syntax::Highlight::HTML is a Perl module to highlight a HTML syntax. SYNOPSIS use Syntax::Highlight::HTML; my $highlighter = new Syntax::Highlight::HTML; $output = $highlighter->parse($html); If $html contains the following HTML fragment: < !-- a description list --> < dl...


Platforms: *nix

Phpfw is a framework for PHP that provides a base on which various database backend applications can be built. Phpfw project allows for easy creation of CRUD applications - apps where most of the code is focussed on Create Read Update Delete operations on the database. It uses MVC-ish patterns to...


Platforms: *nix

Natural Docs is an extensible, multi-language, source code documentation generator written in Perl. Its syntax is transparent so the source comments read just as easily as the generated documentation. Natural Docs also focuses on automation and high-quality HTML output. Keep in mind that if...


Platforms: *nix

LayManSys – short for Layout Managment System – is a PHP framework, that helps you providing a consistent look&feel of your web pages (it is no CMS). LayManSys project stores the meta information about the documents in RDF files and uses them for generating the HTML frame (< head > and...


Platforms: *nix

PhpBuns generates SQL queries and web pages written in PHP. It makes it possible to, among other things, generate the queries and the pages for adding, editing, deleting, listing or retreiving data from an SQL database. It uses AdoDB (http://php.weblogs.com/ADODB) as an abstraction layer for...


Platforms: *nix

Zoem is a macro/programming language. Zoem project can be used as an all-round macro language, but has more specialized uses as well. One such specific use is its support for creating small mark-up languages that map to different devices. It has character filtering capabilities tailored to this...


Platforms: *nix

phpPackageScan should be very useful for almost any PHP developer out there that works on a plugin, module, extension or addon of a large PHP web application or anyone that wants to document a php project.Now what is it exactly? Basically the app scans through a folder you drop over it and...


Platforms: Mac

ADMLogger is a log analyzing engine based on fireparse. After I had written fireparse, I had found myself writing little scripts based on it. Like one that told me what my FTP server did that day. And then more things like - were unauthorized machines trying to get IP addresses from my DHCP...


Platforms: *nix

Although mod_tidy makes the impression of being a validator, it isnt one mod_tidy is just a handy and comfortable tool to help make web documents being valid. mod_tidy is a TidyLib based DSO module for the Apache HTTP Server Version 2 to parse, clean-up and pretty-print the webservers (X)HTML...


Platforms: *nix

DBIx::HTMLinterface is a class for creating a CGI interface to a database. SYNOPSIS use CGI; use DBI; use DBIx::HTMLinterface; $cgi = new CGI; $dbh = DBI->connect("DBI:mysql:[DATABASE]:[HOSTNAME]","[USERNAME]","[PASSWORD]") ); $DBinterface = new DBIx::HTMLinterface ($cgi, $dbh,...


Platforms: *nix

mp_doccer is a tool that travels C code files, and extracts specially marked information to build documentation. This documentation can be generated in HTML, man pages, or an executable shell script. The markup is very similar to that in the Linux 2.4.x kernel sources. mp_doccer is a...


Platforms: *nix

Deluxe Loginfo generates email reports of CVS and Subversion changesets for multiple repositories. The log message provides full details: author, log message, the list of modified files, and (optionally) a unified diff format patch for the change. Deluxe Loginfo features Bugzilla and ViewCVS...


Platforms: *nix

Ravenous is full featured web server written in Java. It allows you to write dynamic pages in Java without the need to read stacks of books before you get started... pure javalicous programming for your web projects! Ravenous is different becouse it attempts to make the process of writing high...


Platforms: *nix

Multistat is designed to be a flexible log file parser for multiple game servers. Designed with an extensible plugin interface, it is able to process statistics for any game and output them in any format simply by the use of custom modules. Currently modules for Halflife, Counterstrike...


Platforms: *nix

edictionary is a nifty little application which you can use as your dictionary. It will fit quite well into your command line intensive job and its faster than your browser too! edictionary can be used to view the meaning of English words. It can also provide related details like etymology,...


Platforms: *nix

qscore project can parse Quake3:Arena (and compatible) server.log into high scores and statistics. Options: --version output version information and exit --help display this help and exit Strip & Sort: --sort=HOW sort player results HOW=0 do not sort (default) HOW=1 sort by frags...


Platforms: *nix

Funnel Web is a Web site analysis tool which provides detailed charting and statisticalanalysis of any Web Server log file. It provides detailed statistical analysis of server load andWeb site usage and generates HTML output files. For the first time Funnel Web will support a host of new features...


Platforms: Mac