Haplotype Assembly

Game Toolbox is a C# assembly designed to facilitate the creation of games and game prototypes. It contains no graphics code, does not depend on XNA, and is Mono-compatible. It provides implementations of A*, GOAP, a genetic algorithm, and more. Platforms: Windows, Mac, Linux

HaploView is a Java based tool for use by biologists in the study of genetic haplotype data. It provides a quick, easy interface to many common tasks involved in such analyses. Platforms: Windows, Mac, Linux

The annotation files for Illumina SNP genotyping platforms generated for performing Homozygosity Haplotype analysis Platforms: Windows, Mac, Linux

The intention of this project is to support users of Randall Hyde's HLA (High Level Assembly) language who wish to maintain, extend, or evolve the HLA Standard Library. http://webster.cs.ucr.edu/AsmTools/HLA/index.html Platforms: Windows, Mac, BSD, Linux

JPACS, Java Processor and Cache Simulator, was developed to give a simple and clear tool to simulate a processor with a complete associative memory cache at ISA level, using direct memory access or using a program written in assembly. Platforms: Windows, Mac, Linux

MAGMA: Multiobjective Analyzer for Genetic Marker AcquisitionA genetic algorithm for generating SNP tiling paths from a large SNP databasebased on the competing objectives of cost (number of SNPs) and coverage (haplotype blocks):Hubley R., Zitzler Platforms: Windows, Mac, Linux

Maq is a set of programs that map and assemble fixed-length Solexa/SOLiD reads in a fast and accurate way. Platforms: Mac, BSD, Linux

A Java-written MIPS simulator developed to stimulate people learning the Assembly language. It adds graphics, sounds and user interation to make writing assembly programs more interesting. Platforms: Windows, Mac, Linux

Moodtrack contains Python classes for music-emotion analysis and assembly, enabling users to build soundtracks based on emotion and timing. USERS: Music Supervisors/Composers/Producers, Game Audio Developers, Content Providers. FILM DEMO: moodtrack.tv Platforms: Mac, BSD, Linux

NESide is an IDE specially made for coding in assembly language for the NES. Featuring syntax-coloring and integrated editors for palette and name tables.Also includes a plug-in system for extensibility. Platforms: Windows, Mac, Linux

NReflect is a library to provide an extremly simple way to get a description of all types of an assembly. Platforms: Windows, Mac, Linux

The extensor, is a assembly of programs and independent libs (-nostdinc) at the moment for DJGPP, but thought for others GCC-i386. By means of this kit it is possible to construct a operatingsystems or a program boot from the BIOS (i386 embedded syste Platforms: Windows, Mac, Linux

A simple emulator and interpreter application with an Assembly-like integrated language. Written in C#. Works with .NET Framework 2.0/3.0/3.5 and Mono 2.0 Platforms: Windows, Mac, Linux

Alife research platform to study the evolvability of different assembly-like computer languages. It's similar to Tierra and Avida but it's designed to be more general. Platforms: Windows, Mac, Linux

This project is a distributed processing system that is dynamically programmable using a custom assembly-type language. Platforms: Windows, Mac, BSD, Solaris, Linux

Reflexil is an assembly editor and runs as a plug-in for Reflector. Using Mono.Cecil, Reflexil is able to manipulate IL code and save the modified assemblies to disk. Reflexil also supports 'on the fly' C# and VB.NET code injection. Platforms: Windows, Mac, Linux

an implementation of the Inflate decompression algorithm corresponding to deflate compression as used by gzip and compatible with RFC 1951Written in Z80 assembly language, with memory paging support for the Sam Coupe Platforms: Mac

Timina is a Java web-based application for automation of all steps of a genome sequencing project: submission, assembly and annotation of sequences. Platforms: Mac, BSD, Linux

An open source PowerPC CPU simulator and assembler, with associated documentation and tutorials, to facilitate the teaching of modern RISC assembly language programming. Written in java for portability. Platforms: Windows, Mac, Linux

MinCaml: An educational compiler from a tiny ML subset to the SPARC or PowerPC assembly language; Only 2000 lines of Objective Caml, but almost as efficient as---or even more efficient than---OCaml and GCC! Platforms: Windows, Mac, Solaris, Linux