Genome Visualizer

Lemuria is an OpenGL visualization for xmms and gmerlin-visualizer. Lemuria features animated textures, several backgrounds, and a lot of fun stuff. It integrates the Xaos fractal engine for making background textures, and can open the goom DLL.. Platforms: *nix

TNV stands for The Network Visualizer or Time-based Network Visualizer and depicts network traffic by visualizing packets and links between local and remote hosts. TNV is intended for network traffic analysis to facilitate learning what constitutes normal activity on a network, investigating... Platforms: *nix

MayaVi is a free, easy to use scientific data visualizer. It is written in Python and uses the amazing Visualization Toolkit (VTK) for the graphics. It provides a GUI written using Tkinter. MayaVi is free and distributed under the conditions of the BSD license. It is also cross platform and... Platforms: *nix

LED Spectrum Analyser is a colourful visualizer for iTunes that emulates a LED Spectrum Analyzer, with lots of customisation available of layout, colours, meter ballistics and much more. A complete rewrite of a similar earlier release for SoundJam, with many new features. Platforms: Mac

vTunes 3.0 is an OpenGL accelerated iTunes visualizer. This version offers a *major* performance boost, and some other minor updates. Platforms: Mac

GasLight is an OpenGL visualizer plugin for iTunes. It's essentially yet another spectrum analyzer, but features a whole range of customizable options to produce some beautiful effects. Platforms: Mac

iMethy is a handy, easy to use genome-wide DNA methylation analysis and visualization application based on next generation sequencing. Firstly, it holds the command-line pipeline to align the bisulfite-treated short read, identify the methylcytosine at CG/CHG/CHH sites, detect the methylation... Platforms: Windows

Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation. Artemis is written in Java, and is available for UNIX, Macintosh and... Platforms: Windows, Mac, Linux, Java

A Quartz Composer iTunes Music visualizer for Leopard. Platforms: Mac

A Java application used in whole genome analysis to display SNPs in a genomic context. Supplementary data is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks. Platforms: Windows, Mac, Linux

CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74 Platforms: Windows, Mac, BSD, Linux

This is a software visualizer built entirely on non-iconic glyphs, with support for color-impaired operators. Renderings produced show software as a diagram, not as a written language. The SableCC language interpreter is involved. Platforms: Windows, Mac, Linux

... visualizes EBNF (Extended Backus Naur Form). Therefore an .ebnf File is required, which contains rules written in EBNF. The program parses the rules, visualizes them as syntax diagrams and is able to generate .gif and .emf files for further use. Platforms: Windows, Mac, Linux

Get an up-to-date view of what's happening in your social network. You can browse based on specific keywords (tags) and see who's talking about what in your proximity. Platforms: Windows, Mac, Linux

An open-sourced distributed computing client for exploring the results of the Human Genome Project. Platforms: Windows, Mac, BSD, Linux

GAAS (Genome relative Abundance and Average Size) is a bioinformatic tool to calculate accurate community composition and average genome size in metagenomes by using BLAST, advanced parsing of hits and correction of genome length bias. Platforms: Windows, Mac, Linux

Simulates and visualizes swarming algorithms with limited communication. Also provides an interface to animate particle motion by playback (with pause, fastforward, and rewind) of path information from files. Can output EPS figures and avi frames. Platforms: Windows, Mac, BSD, Linux

The Hanalyzer is a tool designed to help biologists explain results observed in genome-scale experiments and to generate new hypotheses. It combines information extraction, semantic data integration, reasoning, and visualization. Platforms: Windows, Mac, Linux

iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS) peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser (http://genome.ucsc.edu/). iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or... Platforms: Windows, Mac, Linux

3D file manager, file system visualizer which can have many interfaces and skins, which offer visibility and comfort in navigation on your computer, your file system and will give you an opportunity to feel yourself in 21 century. Platforms: Windows, Mac, Linux