Genetics

PGDSpider was built using the Java programming language as a conversion app for population genetics and genomics programs. The software facilitates the data exchange possibilities between programs for a vast range of data types (e.g. DNA, RNA, NGS, microsatellite, SNP, RFLP, AFLP, multi-allelic... Platforms: Windows

The advent of massively parallel sequencing technologies has fundamentally changed the study of genetics. New platforms like the Illumina GAIIx and the Roche GS yield unprecedented levels of sequencing throughput. The analysis and interpretation of data from next-generation sequencing platforms... Platforms: Windows

With the introduction of genetics, you can control your Sims over a lifetime and pass their Sims' DNA down from one generation to the next. The Sims evolve by genetically passing on physical and personality traits. Create and play your own virtual sitcom by choosing one of five different... Platforms: Mac

Size Genetics - Review! Are there any side effects ScreenSaver Platforms: Windows

SysGenSIM is a bioinformatics toolbox to create artificial gene expression datasets by simulating Systems Genetics experiments. Platforms: *nix

PID controller has been extensively used in the industrial world. But in this controller it is difficult to tune the PID gains.We apply the genetic algorithm(GA) to tune the PID gains. The GA is agorithm using the biotic; gene the biotic; genetics. Platforms: Matlab

Seqlib is a Python module and application package for population genetics (and more). It allows processing, analyzing and simulating biological sequences. It is specifically designed for automated large-scale sequence analysis. Main features: * Fasta-centered input and output, format... Platforms: Mac

GenoDive is a Mac-only program for population genetics analyses. The present version is a beta, which means that it will still contain bugs, and some analyses are not yet fully implemented. Please report any issues, bugs or praise that you may have to the author. This version should work on Mac... Platforms: Mac

(p)IPHULA is a software that investigates parameters of population history based on a Monte Carlo simulation using the maximum likelihood framework. Further details on how to compile, install, run, and use this program can be found in the (p)IPHULA manual (PDF). Reference: The method is... Platforms: Mac

simuPOP is a general-purpose individual-based forward-time population genetics simulation environment. The core of simuPOP is a scripting language (Python) that provides a large number of objects and functions to manipulate populations, and a mechanism to evolve populations forward in time. Using... Platforms: Mac

Biomatters was founded on the principle of creating software that can be used by all researchers in their daily work. Our technology converts raw data into meaningful, visual information, simplifying research and ultimately improving efficiency. Biomatters???*a*? flagship software packages are:... Platforms: *nix

GeXpert is an expert system that can be used for genetics and metabolic pathway analysis. GeXpert can help Biotechnologists do their work faster, reducing the time required for performing, analyzing and storing the results of Bioinformatics research. Platforms: *nix

Statistics::ChiSquare - How well-distributed is your data? SYNOPSIS use Statistics::Chisquare; print chisquare(@array_of_numbers); Statistics::ChiSquare is available at a CPAN site near you. Suppose you flip a coin 100 times, and it turns up heads 70 times. Is the coin fair? Suppose... Platforms: *nix

Bio::Tools::CodonTable is a bioperl codon table object. SYNOPSIS # This is a read-only class for all known codon tables. The IDs are # the ones used by nucleotide sequence databases. All common IUPAC # ambiguity codes for DNA, RNA and animo acids are recognized. # to use use... Platforms: *nix

Peptide::Pubmed is a Perl module that can extract peptide sequences from MEDLINE article abstracts. SYNOPSIS use Peptide::Pubmed; $parser = Peptide::Pubmed->new; $in = { PMID => q[15527327], Author => q[Doe JJ, Smith Q], Journal => q[J Biological Foo. 2004;8(2):123-30.], Title => q[Foo,... Platforms: *nix

Mesquite is software for evolutionary biology, designed to help biologists analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Because it is modular, the... Platforms: Mac

Get ready for the Sims 2 with the Sims Body Shop, a character-creation software tool. Customize a Sim with tattoos, hair, clothing and more, including facial expressions editable in 50 ways. Then take advantage of Body Shop's special .Mac integration to save your Sim directly to your iDisk Public... Platforms: Mac

LDhat is a C/C++ written project that was specially designed for the analysis of recombination rates from population genetic data. The following programs are included: · convert: Simple manipulation of DNA sequence data · pairwise: Parametric and nonparametric analyses of recombination ·... Platforms: Windows

Diversity Maps was specially developed as a data visualization utility for plant geneticists and breeders. Diversity Maps is a Perl-based tool that can generate publication-quality, vector-based chromosome maps displaying differences in marker states between individuals. Platforms: Windows, 2K, XP, Windows Vista, 7, 7x64

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI... Platforms: Mac