Genetic

This is a MATLAB toolbox for the quality control and scoring of EMAP and SGA genetic interaction data. It includes a graphical user interface and some automatic plot-generating tools. Platforms: Windows, Mac, Linux

The basic allelic case-only test for interaction between a pair of genetic loci. This implementation uses a permutation test to calculate marker-pair-wise p-values, gene-pair-wise p-values, and global family-wise p-values. See the read.me, or upcomin Platforms: Windows, Mac, Linux

This package aims to enable complex ideogram drawing in genetic applications for different species. Platforms: Windows, Mac, Linux

Darwin 2: Java Framework for Evolutionary Computation (genetic algorithm, GA). A true framework with out-of-the-box functionality and extensibility of all classes. Interface-based pattern with dependency-injection to configure components. Platforms: Windows, Mac, Linux

Classical genetic algorithm suffers heavy pressure of fitness evaluation for time-consuming optimization problems. To address this problem, we present an efficient genetic algorithm by the combination with clustering methods. The high efficiency of the proposed method results from the fitness... Platforms: Windows, Mac, BSD

EpochX is an open source genetic programming framework, specifically for analysing the properties of evolutionary automatic programming. It supports 3 popular representations - Strongly-Typed GP, Context-Free Grammar GP and Grammatical Evolution. Platforms: Windows, Mac, Linux

Evolve is a simulation written in java that uses the Genetic Algorithm to evolve intelligent agents acting in a rich environment. Platforms: Windows, Mac, Linux

Genetic Architecture Model Emulator for Testing and Evaluation of Software Platforms: Windows, Mac, Linux

GAPI (pronunced gappy) is the Genetic Algorithms Programming Interface - a set of Java classes that allow users to easily integrate Genetic Algorithms into their Java programs. See 'GAPI specs' in the Feature Requests forum for more info. Platforms: Windows, Mac, Linux

Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of... Platforms: Windows, Mac, Linux

HaploView is a Java based tool for use by biologists in the study of genetic haplotype data. It provides a quick, easy interface to many common tasks involved in such analyses. Platforms: Windows, Mac, Linux

JGenAlg is a java toolbox for working with metaheuristic procedures (Genetic Algorithms, Island model, Particle Swarm, Ant Swarm). JGenAlg have a GUI, a Client/Server architecture, work with threads and can be use under distributed enviroments. Platforms: Windows, Mac, Linux

InUtero is a fetal genetic risk assessment calculator being developed for UCSD. Platforms: Windows, Mac, Linux

Set of Java packages to apply Genetic Algorithms to any kind of problem. Various genetic operators are implemented and an example shows of how the system could be applied to digital circuit evolution. Platforms: Windows, Mac, Linux

JBeagle is a highly extensible toolkit for creating and running evolutionary algorithms, such as genetic algorithms and genetic programming.It aims to provide support for parallel processing, configuration and tracking via the GUI or command line, et Platforms: Windows, Mac, Linux

Simple genetic programming framework. Features a robust set of interfaces and standard implementations for rapid development and ease of experimentation. Platforms: Windows, Mac, Linux

Jeep is a modular, abstract and distributed evolutionnary programming core written in Java, allowing to grow autonomous agents as well a gene pool (as in genetic algorithms). Platforms: Windows, Mac, Linux

JNSGA2 is a Java library with an implementation of the multi-objective genetic algorithm NSGA-II published by Deb et al. Platforms: Windows, Mac, Linux

Easy install web server for Genetic and Molecular Biological Laboratory so that PI can update lab homepage himself. Also serve as Lab database server that store DNAStrider plasmid , order tracking and mouse colony database. Platforms: Windows, Mac, Linux

Venice is a stock market trading programme that supports portfolio management, charting, technical analysis, paper trading and genetic programming. Venice runs in a graphical user interface with online help and has full documentation. Platforms: Windows, Mac, Linux