Genes Experiment

I wrote GPS Inspector as an experiment to learn more about GPS and how it could be used within JAVA. I figured others might find it useful or interesting so I have posted the source (GPLv3) and binaries here. It uses parts of other java libraries including: World Wind Java, Gpsylon, JFreeChart,... Platforms: Mac

Explore stretching just a single strand of DNA using optical tweezers or fluid flow. Experiment with the forces involved and measure the relationship between the stretched DNA length and the force required to keep it stretched. Is DNA more like a rope or like a spring? Platforms: Mac

PyEPL (the Python Experiment-Programming Library) is a library for coding psychology experiments in Python. It supports presentation of both visual and auditory stimuli, and supports both manual (keyboard/joystick) and sound (microphone) input as responses. To use PyEPL, you need to either *... Platforms: Mac

The Synonym and Global Translator is a Gaggle Enabled Java program that enables a user to translate between different gene identifiers and find orthologous genes for a number of different species through the use of the BioNetBuilder database server. It is free to use, but is no longer actively... Platforms: Mac

Build a gene network! The lac operon is a set of genes which are responsible for the metabolism of lactose in some bacterial cells. Explore the effects of mutations within the lac operon by adding or removing genes from the DNA. Sample Learning Goals: * Predict the effects on lactose... Platforms: Mac

This Java-script program simulates events in a Bubble Chamber. It will simulate one particle, the decay K- + p??a* a*?za*? ?Y?*+ ?Y?*- (?za*???a* a*p?Y?*-), and a Higgs decay in a Collider experiment (See Properties, under File). It also allows changes to the momentum and magnetic field, as well... Platforms: Mac

SAMMate, a Graphical User Interface (GUI) RNA-seq analysis pipeline, allows biomedical researchers to quickly process SAM/BAM files and is compatible with both single-end and paired-end sequencing technologies. SAMMate automates some of more standard procedures in RNA-seq analysis. Features:... Platforms: Mac

This application generates an XML representation of local files on your system. Drag and drop files that you would like to include in the XML file, and it will create a list on the fly that you can copy/paste or save as a file. Includes numerous options for the formatting of the document. It... Platforms: Mac

Growth Curve is a simple software which allows to build microorganism growth curves in the logarithmic scale. It estimates medium doubling time and it's standard deviation. All curves are proposed to be the duplications of one experiment. Platforms: Mac

Ruby SVM is a Ruby binding to the very popular and highly useful libsvm library (released under a seperate license) This allows you to effortlessly experiment with machine learning, in particular Support Vector Machines, in Ruby. SVM's have found use in Platforms: *nix

Free and open-source pyasn1 library makes it easier for programmers and network engineers to develop, debug and experiment with ASN.1-based protocols using Python programming language as a tool. Abstract Syntax Notation One (ASN.1) is a set of ITU standards concered with provisioning... Platforms: *nix

QTL Reaper analyzes data from progeny of a genetic cross in experimental plants or animals. It seeks the location of genes that affect a heritable trait, and it is specially designed for analysis of gene expression measurements. Platforms: *nix

The Ubuntu Font Family are a set of matching new libre/open fonts. The development is being funded by Canonical on behalf the wider Free Software community and the Ubuntu project. The technical font design work and implementation is being undertaken by Dalton Maag. Both the final font... Platforms: *nix

Aghermann is a sleep-research experiment management program, with a facility for reading, displaying, and scoring EEG recordings in edf format; power spectra analysis and visualization; and Process S simulation following Achermann et al, 1993. Platforms: *nix

ORSEE is a web-based Online Recruitment System, specifically designed for organizing economic experiments. It's key features are: multiple experimenter/laboratory/subjectpool/experiment classes/language support, attribute query selection, random recruitment, public and internal experiment... Platforms: *nix

Free software developed for automation of professional measurement systems, data acquisition, processing and analysis. Especially suitable for scientists who would like to make high-performance, precise measurements in the experimental physics. Optimized for real-time operation,... Platforms: Windows

View and pick fonts using side-by-side comparison, or compare two or three variations of just one font. Experiment with alignment, colors and font sizes and style to get just the right look. Platforms: Windows

With this tool you can pick any font installed on your system and check out how it will appear in a range of sizes and styles and against a background of any colour. This is particularly useful when you are word processing or creating graphics and you do not wish to experiment directly on the... Platforms: Windows

BVTech Plasmid is DNA plasmid drawing software that you can use to draw circle or linear plasmid maps with double strands or a single strand. You can label the plasmid with genes and restriction sites in different colors, text, and styles. Plasmid map can be highly customized. You can arrange... Platforms: Windows

Coil Maestro calculates the optimal dimensions of coils for the desired inductance, it can also calculate inductance based on the physical dimensions of the coil. It is simple to use but flexible so it can help you not just to make calculations but also to find optimal measures or experiment with... Platforms: Windows