Gene Interaction
GMDR was built as an Open-Source interaction analysis instrument that is aimed to perform gene-gene interaction with generalized multifactor dimensionality methods.
This Java-based tool offers a generalized combinatorial approach for detecting gene-by-gene and gene-by-environment interactions.
Platforms: Windows, 2K, XP, Windows Vista, 7
License: Freeware | Download (435): GMDR Download |
UNPHASED is a small, simple, Java based application specially designed to offer users a versatile tool for performing genetic association analysis.
This utility implements maximum-likelihood inference on haplotype and genotype effects while allowing for uncertain phase and missing genotypes....
Platforms: Windows
License: Freeware | Download (391): UNPHASED Download |
Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of...
Platforms: Windows, Mac, Linux
License: Freeware | Size: 60.89 MB | Download (45): Gene-Environment iNteraction Simulator 2 Download |
GENE Graph Export Engine is an advanced XML exporter. GENE Graph Export Engine is a complex convertor/framework for multi-namespace XML transforming and exporting. It is able to convert various XML types including SVG, DocBook, MathML, XSL-FO, and their combinations into a wide area of output...
Platforms: *nix
License: Freeware | Size: 1.1 MB | Download (96): GENE Graph Export Engine Download |
This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure. Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent,...
Platforms: Windows, Mac, *nix, Perl, BSD Solaris
License: Freeware | Download (65): Perl Entrez Gene Parser Download |
Conrad is both a high performance Conditional Random Field engine which can be applied to a variety of machine learning problems and a specific set of models for gene prediction using semi-Markov CRFs.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 12.65 MB | Download (43): Conrad CRF Engine & Gene Caller Download |
Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 113.65 KB | Download (53): Disease Gene Profiler Download |
Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 35.3 KB | Download (45): Entrez Gene Parser in Perl Download |
The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 44.5 MB | Download (47): Gene Ontology Download |
GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 3.62 MB | Download (55): GRaPe - Gene Reaction Protein Builder Download |
LiveGMS is a PHP/MySQL driven gene editor for the game Creatures 3 / Docking Station. It provides a platform independent online editor with most features other binary genetics editors have.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 1.83 MB | Download (50): Live gene manipulation system (LiveGMS) Download |
a simple function that returns a colormap, C, for visualizing gene expression. C is just a N x 3 matrix [R G B] describing the range of color values.example usage: C = exp_colormap('blue-yellow',64); colormap(C);called without any arguments, it returns a [3 x 64] green-red colormap.options for...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (40): Gene Expression Colormap Download |
Allows user interaction among a trusted community of users to foster a more direct and personal exchange of ideas.This module was created for a specific project of EKOS Communications. The intention of the module was to foster communication between users of a private website. The users and...
Platforms: PHP
License: Freeware | Size: 20.48 KB | Download (40): Interaction Centre Download |
This script uses the gene name field(s) in a table downloaded from the UCSC Genome Browser to add gene names to an existing SVS marker map saved in the DSM file format. Note: Though the following instructions specify downloading a table containing genes based on the Mar. 2006 (NCBI36/hg18) Human...
Platforms: Mac
License: Freeware | Size: 10.24 KB | Download (47): Add Gene Names to Marker Map Download |
Build a gene network! The lac operon is a set of genes which are responsible for the metabolism of lactose in some bacterial cells. Explore the effects of mutations within the lac operon by adding or removing genes from the DNA. Sample Learning Goals: * Predict the effects on lactose...
Platforms: Mac
License: Freeware | Size: 1.14 MB | Download (35): Gene Machine: The Lac Operon Download |
Brcontrol is a set of patches to allow some interaction between a IDS and a firewall (currently snort and linux netfilter). It will help in the creation of aggresive honeypots or other advanced firewall and ids configurations. In can also work as bridge.. Get Brcontrol at SourceForge.net. Fast,...
Platforms: *nix
License: Freeware | Size: 15.36 KB | Download (93): Brcontrol Download |
grammydotru123 eases interaction with the MP3 portal grammy.ru. It works in this way: you seek up the url of an artist or an album at grammy.ru, and then just invoke grammydotru123 or python grammydotru123 and it fetches all songs belonging to the artist/album (a song of an album of...
Platforms: *nix
License: Freeware | Size: 17.41 KB | Download (91): grammydotru123 Download |
Etiquette provides an interaction protocol construction tool. Etiquette is an interaction protocol construction toolkit. The projects goal is to build a framework for rapid design of network communication code. Etiquette interaction protocols are intended to describe valid communication...
Platforms: *nix
License: Freeware | Size: 30.72 KB | Download (102): Etiquette Download |
Kojoney project is a low level interaction honeypot that emulates an SSH server. The daemon is written in Python using the Twisted Conch libraries. Kojoney is a mix of the spanish word cojon (s/c/k/) and honey. In the spanish language the sentence "estar hasta los cojones" is used to express...
Platforms: *nix
License: Freeware | Size: 3.1 MB | Download (95): Kojoney Download |
Imager::TimelineDiagram is a Perl extension for creating Timeline Diagrams (designed to show system interaction over time). SYNOPSIS use Imager::TimelineDiagram; use Imager::Font; my $tg = Imager::TimelineDiagram->new( #maxTime => 10, #dataLabelSide => left, labelFont =>...
Platforms: *nix
License: Freeware | Size: 86.02 KB | Download (155): Imager::TimelineDiagram Download |