Gene Clusters Reliability

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AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general. AnnaF was build upon the pipeline framework Anna. Platforms: Windows, Mac, Linux

The Gene Expression Programming Framework in Java.It separates the process of evolution from the process of interpretation of the chromosome, allowing the use of various schemes in the chromosome. Platforms: Windows, Mac, Linux

Cluster Networks are a new style of neural simulation / neural network modeling, that models networks of neural populations ('clusters') that transform and transmit information using precisely-timed, graded bursts ('pulses' or 'volleys') of firing. Platforms: Windows, Mac, Linux

distDES is a Java RMI-based application which manages load balancing on heterogeneous clusters. Development will extend the theoretical initial implementation to include clustered Rainbow Table generation and encryption algorithm collision detection. Platforms: Windows, Mac, Linux

A simple, fast, thread safe, standards based cache for Java, and provides memory and disk stores and distributed operation for clusters. ehcache is widely used in such open source projects as Hibernate and Spring. Terracotta offers enterprise edition Platforms: Windows, Mac, Linux

EPTable is a simple web-based tool to analyze microarray gene expression profiles with additional gene profiles. Platforms: Mac, BSD, Linux

Ericscript is a computational framework to detect gene fusions from paired end RNA-seq data with high sensitity and specificity. Platforms: Windows, Mac, Linux

EST Express is an open-source, cross-platform web server application that imports sequences from cDNA libraries and provides several layers of annotation based on Entrez Gene to allow the user to highlight useful genes and manage cDNA library projects. Platforms: Windows, Mac, Linux

Genevar (GENe Expression VARiation) is a platform of database and web services for the integrative analysis and visulization of SNP-gene assocaitaions in eQTL studies. Platforms: Windows, Mac, Linux

Gmandel is a fractal image generator for SMP and computer clusters. The graphic frontend is GTK-2 based, although GTK-1.2 is also available. It is intended to explore unknown details of fractals and to provide benchmarks for computer clusters. Platforms: Mac, BSD, Linux

Jeep is a modular, abstract and distributed evolutionnary programming core written in Java, allowing to grow autonomous agents as well a gene pool (as in genetic algorithms). Platforms: Windows, Mac, Linux

A graphical front end to view jobs submited to schedulers on grid/clusters. Platforms: Windows, Mac, Linux

JReliability allows to derive several reliability-related measures like Mean-Time-To-Failure (MTTF) or Mission-Time (MT) of complex systems that are modeled using Boolean functions, efficiently encoded in Binary Decision Diagrams (BDDs). Platforms: Windows, Mac, Linux

An easy-to-use simulator for decentralized distributed scheduling in Clusters, Grids, and Cloud ecosystem Platforms: Windows, Mac, Linux

Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments. Platforms: Windows, Mac, Linux

Manatee is a web-based gene evaluation and genome annotation tool. Manatee can store and view annotation for prokaryotic and eukaryotic genomes. Platforms: Windows, Mac, Linux

Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE) Platforms: Windows, Mac, Linux

OntoExtractor is a way of building ontologies that proceeds in a bottom-up fashion, defining concepts as clusters of concrete XML objects. From a set of XML documents the application generates a taxonomy. OntoExtractor has been developed so far by the Kn Platforms: Windows, Mac, Linux

PanOCT, Pan-genome Ortholog Clustering Tool, is a program written in PERL for pan-genomic analysis of closely related prokaryotic species or strains. Unlike traditional graph-based ortholog detection programs, it uses micro synteny or conserved gene neighborhood (CGN) in addition to homology to... Platforms: Mac, Linux