Gene

Games::Battleship - "You sunk my battleship!" SYNOPSIS use Games::Battleship; $g = Games::Battleship->new(qw( Gene Aeryk )); $g->add_player(Stephanie); $winner = $g->play(); print $winner->name(), " wins!n"; @player_objects = @{ $g->players }; $player_obj = $g->player(Professor... Platforms: *nix

Bio::Graphics::Feature is a simple feature object for use with Bio::Graphics::Panel. SYNOPSIS use Bio::Graphics::Feature; # create a simple feature with no internal structure $f = Bio::Graphics::Feature->new(-start => 1000, -stop => 2000, -type => transcript, -name => alpha-1... Platforms: *nix

Textbender project is a toolkit for collaborative authoring based on structures and methods derived from nature. Structures include a genetic code, populations, and a gene pool. A text is encoded with genetic markup and then distributed out to writers to form a population of copies and a gene... Platforms: *nix

The Zinf audio player is a simple, but powerful audio player for Linux and Win32. It supports MP3, Ogg/Vorbis, WAV and Audio CD playback, with a powerful music browser, theme support and a download manager. It is based on the FreeA*p audio player which was developed by EMusic.com -- however,... Platforms: *nix

PGAPy is a wrapper for pgapack, the parallel genetic algorithm library, a powerfull genetic algorithm library by D. Levine, Mathematics and Computer Science Division Argonne National Laboratory. The library is written in C. PGAPy wraps this library for use with Python. The original pgapack... Platforms: *nix

GO::View is a Perl module that creates a gif or png image for visualizing the GO DAG. This perl module generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the GO::TermFinder perl module created by the Stanford... Platforms: *nix

Bio::Matrix::PSM::InstanceSite is a PSM site occurance. SYNOPSIS use Bio::Matrix::PSM::InstanceSite; #You can get an InstanceSite object either from a file: my ($instances,$matrix)=$SomePSMFile->parse_next; #or from memory my %params=(seq=>TATAAT, id=>"TATAbox1",... Platforms: *nix

Bio::GMOD is a unified API for Model Organism Databases. SYNOPSIS Check the installed version of a MOD use Bio::GMOD::Util::CheckVersions.pm my $mod = Bio::GMOD::Util::CheckVersions->new(-mod=>WormBase); my $version = $mod->live_version; Update a MOD installation use Bio::GMOD::Update;... Platforms: *nix

Nowadays, the use of so-called RNA interference is a common technique applied by molecular biologists to determine the function of the many genes in our genome.Unfortunately, the design of oligonucleotides, the building blocks for this technique, is a time-consuming and error-prone task. iRNAi... Platforms: Mac

This program, BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. BayeScan is based on the multinomial-Dirichlet model. One of the simplest possible scenarios covered consists of an island model in... Platforms: Windows, Mac, Linux

GProcessor is a small, easy to use application specially designed to help you with the statistical analysis of GenePix data, including dye effect adjustment and ANOVA analysis. Microarray is one of the most fascinating technologies in the millennium. It is a novel invention to exploit DNA... Platforms: Windows

UNPHASED is a small, simple, Java based application specially designed to offer users a versatile tool for performing genetic association analysis. This utility implements maximum-likelihood inference on haplotype and genotype effects while allowing for uncertain phase and missing genotypes.... Platforms: Windows

IsTa is a small, simple application that will help you find closed frequent item sets by intersecting transactions, which is based on the insight that an item set is closed if it is the intersection of all transactions that contain it. Such an approach can be highly competitive in special... Platforms: Windows

Carpenter is a handy, easy to use application specially designed to help you find closed frequent item sets with the carpenter algorithm, which enumerates transaction sets, in contrast to many other frequent item set mining algorithms, which enumerate item sets. Such an approach can be highly... Platforms: Windows

Olorin is an interactive filtering utility built using the Java programming language. The program can be used for next generation sequencing data coming from the study of large complex disease pedigrees. Olorin, is a tool which integrates gene flow output from Merlin and next generation... Platforms: Windows

MEFIT, also known as the Microarray Experiment Functional Integration Technology is developed as a system for microarray integration. Given any amount of microarray data, it predicts the probability of pairwise functional relationship for any gene pair within individual biological functions.... Platforms: Windows

Jenetics is a Java based object oriented library of an Genetic Algorithm. The library offers a clear separation of the several concepts of the algorithm, e.g. Gene, Chromosome, Genotype, Phenotype, Population and FitnessFunction. for WindowsAll Platforms: Windows

IRobot is the Internet-robot engine for Visual Web automation and Web scraping. Completely automatic Web recording. Create your own IRobot Web robot agents to automate everything on the Web. Support Web data integration and computation. Share your Web experience with your friends. Batch form... Platforms: Windows

Free Star Trek Voyager Screensaver Star Trek: Voyager (Voyager) is a science fiction television series in the Star Trek universe. The show was created by Rick Berman, Michael Piller, and Jeri Taylor and is the fifth incarnation of Star Trek, which began with the 1960s series Star Trek, created by... Platforms: Windows

The basic allelic case-only test for interaction between a pair of genetic loci. This implementation uses a permutation test to calculate marker-pair-wise p-values, gene-pair-wise p-values, and global family-wise p-values. See the read.me, or upcomin Platforms: Windows, Mac, Linux