Dna Interaction

The Genome Positioning System (GPS) is a software tool to study protein-DNA interaction using ChIP-Seq data. GPS builds a probabilistic mixture model to predict the most likely positions of binding events at single-base resolution. GPS is a Java software, so it runs on multiple platforms,... Platforms: Windows

To further understand the implementation of hyperparameters re-estimation technique in Bayesian hierarchical model, we added two more prior assumptions over the weight in BayesPI, namely Laplace prior and Cauchy prior, by using the evidence approximation method. In addition, we divided... Platforms: Matlab

This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. Some analyses are: - Assembly of DNA sequencing data - Graphically and... Platforms: Mac

JBoss DNA is a repository and set of tools that make it easy to capture, version, analyze, and understand the fundamental building blocks of information.As models, service and process definitions, schemas, source code, and other artifacts are added to the repository, JBoss DNA "sequences" the... Platforms: Java

Wild-DNA Slide Show: simple picture slide show using pixel shaders 2.0 to display your pictures with cool effects. Platforms: Windows

Wild-DNA PortaLaunch: simple popup menu hidden in a systray icon to launch portable apps. In xml customization for the popup menu, and can launch applications without full path. Icons in menu can be used from libraries (exe, dll...) or bitmaps (png, jpg...) Platforms: Windows, Other

DNA is an open, flexible and extensible deep network analyzer software server and software architecture for gathering and analyzing network packets, network sessions and applications protocols, passively off enterprise class networks. Platforms: Windows, Mac, Linux

DNA Replicator is a graphical tool (written in java) that compute the complementary sequence from an input DNA sequence. It's a really easy used application. Platforms: Windows, Mac, Linux

Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of... Platforms: Windows, Mac, Linux

In one type of gene expression analysis, fluorescently tagged messenger RNA from different cells are hybridized to a microscopic array of thousands of complimentary DNA spots that correspond to different genes. Illuminated spots emit different color light, indicating which genes are expressed... Platforms: Matlab

Allows user interaction among a trusted community of users to foster a more direct and personal exchange of ideas.This module was created for a specific project of EKOS Communications. The intention of the module was to foster communication between users of a private website. The users and... Platforms: PHP

Explore stretching just a single strand of DNA using optical tweezers or fluid flow. Experiment with the forces involved and measure the relationship between the stretched DNA length and the force required to keep it stretched. Is DNA more like a rope or like a spring? Platforms: Mac

Bio::Restriction::Enzyme is a single restriction endonuclease (cuts DNA at specific locations). SYNOPSIS # set up a single restriction enzyme. This contains lots of # information about the enzyme that is generally parsed from a # rebase file and can then be read back use... Platforms: *nix

Brcontrol is a set of patches to allow some interaction between a IDS and a firewall (currently snort and linux netfilter). It will help in the creation of aggresive honeypots or other advanced firewall and ids configurations. In can also work as bridge.. Get Brcontrol at SourceForge.net. Fast,... Platforms: *nix

grammydotru123 eases interaction with the MP3 portal grammy.ru. It works in this way: you seek up the url of an artist or an album at grammy.ru, and then just invoke grammydotru123 or python grammydotru123 and it fetches all songs belonging to the artist/album (a song of an album of... Platforms: *nix

Etiquette provides an interaction protocol construction tool. Etiquette is an interaction protocol construction toolkit. The projects goal is to build a framework for rapid design of network communication code. Etiquette interaction protocols are intended to describe valid communication... Platforms: *nix

Kojoney project is a low level interaction honeypot that emulates an SSH server. The daemon is written in Python using the Twisted Conch libraries. Kojoney is a mix of the spanish word cojon (s/c/k/) and honey. In the spanish language the sentence "estar hasta los cojones" is used to express... Platforms: *nix

Imager::TimelineDiagram is a Perl extension for creating Timeline Diagrams (designed to show system interaction over time). SYNOPSIS use Imager::TimelineDiagram; use Imager::Font; my $tg = Imager::TimelineDiagram->new( #maxTime => 10, #dataLabelSide => left, labelFont =>... Platforms: *nix

MyCGR is an Objective-Caml library and a collection of tools to use the Chaos Game Representation on DNA sequences. MyCGR can empirically check the level and power of the tests and apply them on DNA sequences. It can generalize the dinucleotide abundance profile to a CGR-based relative... Platforms: *nix

Bio::Network::IO::dip_tab is a Perl class for parsing interaction data in DIP tab-delimited format. SYNOPSIS Do not use this module directly, use Bio::Network::IO. For example: my $io = Bio::Network::IO->new(-format => dip_tab, -file => data.dip); my $network = $io->next_network; The... Platforms: *nix