Differentially

QDMR, which is actually short for Quantitative Differentially Methylated Regions is built to be a quantitative approach to quantify methylation difference. It can also be used to identify DMRs from genome-wide methylation profiles by adapting Shannon entropy. The platform-free and species-free... Platforms: Windows

SAMMate, a Graphical User Interface (GUI) RNA-seq analysis pipeline, allows biomedical researchers to quickly process SAM/BAM files and is compatible with both single-end and paired-end sequencing technologies. SAMMate automates some of more standard procedures in RNA-seq analysis. Features:... Platforms: Mac

The application loads microarray data (gene expression ratios) and determines which genes are up- or downregulated by a user-defined ratio cut-off level. For each experiment, lists of differentially expressed genes are computed. Every list will be compared to every other list, and the number of... Platforms: Windows