Dicom Annotation

Dicom images generated by certain machines have nomenclature that is cryptic and non-sequential. This script renames dicom file into a different target file. The new names are automatically generated and include 3 alphabetic letters, followed by the sequence number. The sequence number is derived... Platforms: Matlab

There are two main files, "ReadDicomElementList" which will read all tags of a dicom file into a struct and "WriteDicomElementList" which can write them back to a new file.A large dicom dictionary is included from GDCM with private tags from Philips, Siemens and Toshiba (See... Platforms: Matlab

This plugin allows you to add textual annotations to images by select a region of the image and then attach a textual description, the concept of annotating images with user comments. Integration with JQuery Image Annotation from Chris (http://www.flipbit.co.uk/jquery-image-annotation.html) with... Platforms: PHP

Knowtator is a general-purpose text annotation tool that is integrated with the Prot?*A*g?*A* knowledge representation system. Knowtator facilitates the manual creation of training and evaluation corpora for a variety of biomedical language processing tasks. Building on the strengths of the... Platforms: Mac

HTML Ruby adds support for rendering of ruby annotation. This extension adds support for rendering of both simple and complex ruby annotation including the rbspan attribute, rb/rt text spacing, and unclosed ruby tags. A few user options such as ruby text size are available from Firefox's Add-ons... Platforms: Mac

Gromit-MPX is a multi-pointer GTK3 port of the original Gromit desktop annotation tool. It enables graphical annotations with several pointers at once and is A LOT faster than its predecessor since it uses the XCOMPOSITE extension where available. Platforms: *nix

Galleroo is a web image gallery, or web album, creator for Windows (NT, 2000 and XP) with a unique preview feature and support for movies and annotation. It provides an easy and quick way to automatically create thumbnail web galleries. Built both for the novice and the advanced webmaster,... Platforms: Windows

ZoomIt is a screen zoom and annotation tool for technical presentations that include application demonstrations. ZoomIt runs unobtrusively in the tray and activates with customizable hotkeys to zoom in on an area of the screen, move around while zoomed, and draw on the zoomed image. Platforms: Windows

openDICOM.NET software implements a new approach towards DICOM (Digital Imaging and Communications in Medicine) libraries. DICOM is a worldwide standard in Medical IT and is provided by the National Electrical Manufacturers Assocation (NEMA). This standard specifies the way medical images and... Platforms: *nix

Boingle is a Firefox extension with the role of a social annotation. With the Boingle toolbar for Firefox, you can add your own comments to any web page. The result is a simple, unassuming link left in each page that allows other Boinglers the opportunity to read your comments and add their... Platforms: *nix

jPersist is an extremely powerful, light-weight, object-relational database persistence API that manages to avoid the need for configuration and annotation; mapping is automatic. The project uses JDBC and can work with any relational database and any type of connection resource. jPersist uses... Platforms: *nix

Bio::Seq is a sequence object, with features. SYNOPSIS # This is the main sequence object in Bioperl # gets a sequence from a file $seqio = Bio::SeqIO->new( -format => embl , -file => myfile.dat); $seqobj = $seqio->next_seq(); # SeqIO can both read and write sequences; see Bio::SeqIO #... Platforms: *nix

Caliph & Emir are MPEG-7 based Java prototypes for digital photo and image annotation and retrieval supporting graph like annotation for semantic metadata and content based image retrieval using MPEG-7 descriptors.. Platforms: *nix

The Celera Genome Browser, developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome, and released as open source in 2006. Platforms: Linux

The "MITO - Medical Imaging TOolkit" project coagulates a number of activities aimed at defining and implementing an open-source, cross-platform software architecture for advanced Medical Imaging. MITO toolkit makes it possible to fetch radiological information and images stored in a PACS... Platforms: Windows

CharruaPACS is a handy and straight-forward freeware PACS server, with auto-routing capabilities. It supports DICOM C-STORE SCP for most used SOP classes, with uncompressed Transfer Syntax and JPEG lossless, JPEG lossy and JPEG 2000 Transfer Syntaxes, C-FIND and C-MOVE SCP Study Root model and... Platforms: Windows

GenomeView is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard... Platforms: Windows

The Celera Genome Browser, developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome, and released as open source in 2006. Platforms: Linux

DSI Studio is a software for diffusion MRI processing, including DTI, DSI, and QBI reconstruction as well as fiber tracking. Among the features of DSI Studio are distributed computing and multithread calculation to generate tractographies as well as the ultrafast 3D engine based on DirectX.... Platforms: Windows

dcm4che is designed as an accessible Java-based collection of Open Source applications and utilities for the healthcare enterprise. These applications have been developed in the Java programming language for performance and portability, supporting deployment on JDK 1.4 and up. At the core of... Platforms: Windows