Comparative

A comparative map and trait visualization framework enabling visual integration of genomic data from disparate data sources and allowing rich client-side interactivity and manipulation. Extensible through plugins for new datasources and algorithms. Platforms: Windows, Mac, Linux

Current Comparative Table is a bioinformatics tool for running searches (like BLAST) with large sets of genes.It creates a table that allows you to view many results in many databases and downloads databases daily to ensure the most up-to-date results. Platforms: Mac, BSD, Linux

Strudel is a graphical utility designed to help you visualize genetic and physical maps of genomes for comparative purposes. The application aims to let the user examine their data at a variety of different levels of resolution, from entire maps to individual markers, and explore syntenic... Platforms: Windows, Windows Vista, 7

Java Micro Benchmark is a small, easy to use application specially designed to help you control tasks required to determine the comparative performance characteristics of the computer system on different platforms. This tool can be used to guide optimization decisions and to compare different... Platforms: Windows

OpenLink ODBC Bench is an open-source ODBC Benchmarking tool providing real-time comparative benchmarking for ODBC Drivers, Database Engines, and Operating Systems combinations. The Benchmarks in this application are loosely based on the TPC-A and TPC-C standard benchmarks, with modifications... Platforms: *nix

Choice Components Analysis analyzes survey data on the primary determinants of option choice. These determinants are automatic and blocked selections, and, comparative evaluations between options. Habits and behavioural scripts are examples of automatic selections, while, blocked selections occur... Platforms: Windows

VCMap, also known as The Virtual Comparative Map was developed in order to explore the conserved synteny between Rat, Mouse and Human. Genomes and annotations of additional species (Chicken, Cow, and Pig) were added to the database of information accessible to VCMap. VCMap was developed with... Platforms: Windows

CisPlusFinder predicts cis-regulatory modules based on perfect local ungapped sequences using comparative sequence data from multiple organisms. An overview of the CisPlusFinder can be found in the flowchart.tif file and is described in the following publication: Pierstorff, N., C.M. Bergman &... Platforms: Mac, BSD

GATA is a graphic alignment tool for comparative sequence analysis. It makes use of BLAST to graphically align two DNA sequences, creating box- line- box representations of window scored local alignments. GATA also displays extensive GFF gene annotation. Platforms: Windows, Mac, Linux

GenomePixelizer is a program for comparative genomics, detection of duplication events in genomes, tracking the 'footprints' of evolution. It may be considered as a drawing tool that generates custom images of genomes out of the given set of genes. Platforms: Windows, Mac, BSD, Linux

Java Micro Benchmark - control tasks required to determine the comparative performance characteristics of the computer system on different platforms. Can be used to determine the effect of different software on the performance of a computer system. Platforms: Windows, Mac, Linux

pygr is a bioinformatics toolkit for sequence analysis and comparative genomics. pygr is highly scalable (e.g. one can easily query multi-genome alignments) and easy to use. Please see our new project page and wiki at http://code.google.com/p/pygr. Platforms: Windows, Mac, Linux

Sampsize computes sample size and power for surveys, comparative studies including non-inferiority trials and case-control studies. Platforms: Windows, Mac, BSD, Solaris, Linux

SnoopCGH is a java desktop application for visualising and exploring comparative genomic hybridization (CGH) data. Platforms: Windows, Mac, Linux

This tool enhances signal detection for broad-mass TOF spectra by accounting for changing peak width and providing peak-shape-dependent filtering capabilities. A set of input TOF spectra is processed to produce aligned peak list and array of corresponding signal intensities. Signal processing... Platforms: Matlab

This package includes a number of methods of determining the delay between two period signals. The delay may be calculated to subsample accuracy. Methods include: three-point interpolation using parabolic, Gaussian, or cosine functions; a phase method; and an iterative method.A simple example is... Platforms: Matlab

MCGH is a Matlab toolbox with graphical interface to analysis DNA microarray-based comparative genomic hybridization (CGH) experiments. CGH on DNA microarray enable us to measure the copy numbers of thousands of genes through the genome. M-CGH allows us to visualize the copy number changes... Platforms: Matlab

ProDy is a Python package designed for protein structural dynamics analysis. ProDy is developed by Ahmet Bakan and licensed under the GPLv3. New features and functions are constantly being added to ProDy. The following are the main features that are present and working fine: Protein structure... Platforms: Mac

avast! 4 Home Edition is a free complete ICSA certified antivirus software for home noncommercial use. avast! obtained VB100% awards in 2002/3 Virus Bulletin comparative reviews under Windows XP Pro. avast! Home Edition includes the following components: On Demand Scanner - with Skinnable... Platforms: Windows

The Investment Valuation model is ideal for evaluating a wide range of investment and business case scenarios. While it is based on the traditional discounted cash flow method of valuation, its also provides ability to evaluate economic value added valuation, accounting impact, and a range of... Platforms: Windows