Cluster Analysis

PBS Cluster Viz is a project to display information useful to admins and users about a computing cluster managed by a PBS-compatible resource manager. Information includes load and job distribution. Interactive as well as static output is available.

POSA (Perl Objects for Sequence Analysis) provides an easy-to-use perl interface to handling raw ABI sequence trace files. For example: fasta can be extracted, sequence contigs can be build and putative SNPs and SBE primers can be easily generated.

PetriKit is a modular toolkit for Petri Net analysis. It allows the extraction of basic properties, extraction of invariants, and generation of reachability graph. Results can be formatted in plain text, HTML or XML files.


Platforms: Windows, Mac, Linux

PhysMo is a tool for frame-by-frame video analysis of motion. PhysMo can be calibrated to real-world distances, and exports object 'X-Y displacement (m) against time (s)' data to Microsoft Excel. This enables calculation of velocity and acceleration


Platforms: Windows, Mac, BSD, Linux

PsySoundPro - audio file analysis for objective psychoacoustics measures. Includes measures like Virtual Pitch, Loudness, Etc. etc.


Platforms: Windows, Mac, Linux

python-cluster is a package that allows grouping a list of arbitrary objects into related groups (clusters). Simply give it a list of data and a function to determine the similarity between two items and you're done.


Platforms: Windows, Mac, Linux

A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).


Platforms: Windows, Mac, Linux

Software made available by the Residual Analysis blog, primarily having to do with anthropogenic global warming, e.g. GHCN Processor.


Platforms: Windows, Mac, Linux

While resting-state fMRI is drawing more and more attention, there has not been a software for its data analysis. Based on MATLAB, we developed a package named REST. Currently REST has three main functions: function connectivity, ReHo and ALFF.


Platforms: Windows, Mac, Linux

JRat is the Java Runtime Analysis Toolkit. Its purpose is to enable developers to better understand the runtime behavior of their Java programs. The term behavior includes, but is not limited to performance profiling.


Platforms: Windows, Mac, Linux

The STIanafor is a tool for spatio-temporal data vizualization, analysis and forecast of incidence of sexually-transmitted diseases and drug resistance of pathogens in the Russian Federation. Currently supports gonorrhoea (N. gonorrhoeae) and syphilis (T. pallidum). A set of real data for...


Platforms: Windows, Mac, Linux

Technical analysis library with indicators like ADX, MACD, RSI, Stochastic, TRIX... includes also candlestick pattern recognition. Useful for trading application developpers using either Excel, .NET, Mono, Java, Perl or C/C++.


Platforms: Windows, Mac, Linux

TAS (Transcription Analysis System) is a multi-tier framework for running parameterized SQL queries. Users can analyze new data or new combinations of data with a few clicks in a GUI. Potentially complex/repetitive database interaction is all automated


Platforms: Windows, Mac, Linux

Tidal Analysis Program in PYthon (TAPPY) uses the least squares optimization function from scipy to perform a harmonic analysis (calculate amplitude and phases of a set of sine waves) of a hourly time series of water level values.


Platforms: Windows, Mac, Linux

Web Traffic Analysis Software (or counter) supporting all known SQL databases (or XML). Easy install/upgrade, advanced user recognition technics, high usability. Tracks users via: a) Server Logs, b) PHP inc., c)Web Beacons (JavaScript)


Platforms: Windows, Mac, Linux

It can extract routines, perform segmentation, cluster audio segments and many more from any audio or sound file.Each feature extraction method can accept as argument an audio file, or any preliminary result from intermediary stages of the chain of operations. Also the same syntax can be used for...


Platforms: Windows, Mac, *nix, Matlab, BSD Solaris

This script is a Python module implementing a class which can be used for computing numerical statistics for a given data set.This recipe implements a descriptive statistical analysis class. It's intended to aid in computing numerical statistics for a given data set. It's well documented and...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

SSA generates a trayectory matrix from the original series by sliding a window of length L. The trayectory matrix is aproximated using Singular Value Decomposition. The last step reconstructs the series from the aproximated trayectory matrix. The SSA applications include smoothing, filtering, and...


Platforms: Matlab

Current direct sequence code division multiple access (DS-CDMA) system suffer from Multiple access interference (MAI) and Inter symbol interference (ISI) due to the frequency selective channel. This interference can be avoided by use of Adaptive Beamforming. There are two different minimum...


Platforms: Matlab

This file sets up a simulation environment for analyzing receive systems, gives a basic example, and checks that the results reflect the setup. It is handy because it allows the basic simulation environment to be specified quickly and easily, generates a bunch of useful variables, and takes care...


Platforms: Matlab