Biology Sequence

1) Pls note that the input sequence shall be a power of 4.2) Output bits are reversed in Quaternary System. Platforms: Matlab

MGWT: Identification of protein coding regions using the ModifiedGabor-wavelet transform.Sequence of test:F56F11.4.fasta (included into the zip file)http://www.ncbi.nlm.nih.gov/entrez/viewer....de&val=AF099922http://www.vision.ime.usp.br/~jmena/projec...ome_results/F5/References:[1] J. P.... Platforms: Matlab

This function returns N point DFT samples of 2dw band of Fourier transform of a sequence. Typically, fft() returns N samples of Fourier transform ranging from 0 to 2pi. This function takes the N-point DFT samples and returns N-point samples corresponding to frequency band wc-dw to wc+dw. Platforms: Matlab

Chaotic Binary 32-bit generator according to the article in the IEEE 2001, University of Nebraska "Robust Chaotic PN sequence generation techniques" Created to 'UNIVPM Ancona 26/01/2009%%%To vary the length of the sequence generated (set to 127), just edit N. Platforms: Matlab

Computes Direction Cosine Matrix from Euler angles (in radians) for six basic sequence of rotations around X(Roll),Y(Pitch) and Z(Yaw) axis.Allowed rotations sequences:xyz, xzy, yxz, yzx, zxy, zyxORrpy, ryp, pry, pyr, yrp, ypr----------------------------dcmfromeuler.mfunction to compute DCM from... Platforms: Matlab

Simple interactive viewer of 3 orthogonal slices of 3D volume and of sequence of volumes. The interaction is performed by mouse left button or keyboard arrows. Platforms: Matlab

It is useful to have a counter which can count in an upward sequence as well as in a downward sequence. Here is a Three-Flip-Flop Up-Down Counter which has this provision designed using J-K Flip-Flops available in Simulink. Platforms: Matlab

Bio link contains solutions to some topics in biology and bioinformatics. The solutions will be made available as soon as they are developed. Therefore they may contain bugs. Please let me know if you encounter a bug so that it can be fixed asap. Most tools will be in JAVA. The jar files can be... Platforms: Matlab

ASNread reads in ASN-formatted genetic sequence data into a MATLAB structure. Platforms: Matlab

This is Matlab interface for the C++ implementation of the low discrepancy sequence generators Niederreiter from the GNU Scientific Library.It works under Linux. Platforms: Matlab

This is Matlab interface for the C++ implementation of the low discrepancy sequence generators Sobol from the GNU Scientific Library.It works under Linux. Platforms: Matlab

pISTil (a Pipeline for Interaction Sequence Tag identification and analysis) is a collection of scripts, and programs - running on both Linux and MacOS X systems - for fast analysis of large yeast two-hybrid sequence datasets. Platforms: Mac

NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix this data with your own private data. Genome Workbench can display sequence data in many ways,... Platforms: Mac

SeqTEx: identification of average Next-Generation Sequence DNA length from cross-correlation This project is in development and will be submitting the manuscript soon. Check back for more information about using this program later. Platforms: Mac

ICE Cafe is a software for viewing sequence chromatgram, and measuring peak intensity of each peaks. ICE Cafe is firstly developed for the purpose of detecting RNA Editing using ICE method. However, ICE Cafe also can be used when one uses conventional RNA Editing detection method in which... Platforms: *nix

FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Platforms: *nix

Pythonic access to fasta sequence files pyfasta is a library that offers Pythonic access to fasta sequence files. Usage: .. sourcecode:: python >>> from pyfasta import Fasta >>> f = Fasta('tests/data/three_chrs.fasta') >>> sorted(f.keys()) ['chr1', 'chr2', 'chr3'] >>> f['chr1']... Platforms: *nix

trytond_stock_location_sequence is a Python module to add sequence on location object. Platforms: *nix

ParsInsert efficiently produces both a phylogenetic tree and taxonomic classification for sequences for microbial community sequence analysis. This is a C++ implementation of the Parsimonious Insertion algorithm. Platforms: *nix

UMLGraph facilitates the declarative specification and drawing of UML class and sequence diagrams. One can specify a class design using the Java syntax complemented by Javadoc tags. Running the UmlGraph doclet on the specification generates a Graphviz diagram specification that can be... Platforms: *nix