Biology

MOTIFINFO = GIBBSMOTIFSAMPLER(SEQARRAY,MOTIFVECTOR,ALPHABET,OPTIONS) Searches for the motifs in a set of sequences via Gibbs sampling. seqArray is a cell vector of sequence strings. motifVector is a vector of uniformly-spaced motif widths you wish to optimize. The program iterates over these...


Platforms: Matlab

CHECKFIELD intend to be a facility to handle varargin in functions. It provides error checks, default, and structuring for the varargin. k = CHECKFIELD(field,listfield) where field is a string checks if field is one of the fields in the cell listfield given in second argument. It returns the...


Platforms: Matlab

Welcome to the jMathML wiki. jMathML is a small standalone Java library for manipulating a portion of MathML. It has been developed for use in the Systems Biology domain, using a restricted subset of MathML: * arithmetical operators * trig operators * standard classical functions * logical...


Platforms: Mac

GGobi is an open source visualization program for exploring high-dimensional data. It provides highly dynamic and interactive graphics such as tours, as well as familiar graphics such as the scatterplot, barchart and parallel coordinates plots. Plots are interactive and linked with brushing and...


Platforms: Mac

The following dissertation outlines one possible answer to this question, including an example game-like problem and a Genetic Algorithm (GA) inspired solution. The Genetic Algorithm described acts upon a population of game playing computer agents. Each agent contains a set of expressible...


Platforms: Mac

caBIO (cancer Bioinformatics Infrastructure Objects) is a robust resource for accessing biomedical annotations from curated data sources in an integrated view in support of knowledge discovery. The entities that concern the Central Dogma of Molecular Biology are the core of the model. Data for...


Platforms: *nix