Biological Evolution

LCD enclosure wallpaper. The next generation of displays are LCD's. The reason behind continuing computer evolution is the continuing thirst we have for speed and capacity of our computers. Way back in 1947 an engineer and computing expert, Howard Aiken, predicted that all the United States need... Platforms: Windows, *nix

Biomolecule Toolkit project is an Open Source library for the structural modeling of biological macromolecules. The toolkit provides a C++ interface for common tasks in computational structural biology, to facilitate the development of molecular modeling, design, and analysis tools. Whats New... Platforms: *nix

With AllTray you can dock any application with no native tray icon (like Evolution, Thunderbird, Terminals) into the system tray. A high-light feature is that a click on the "close" button will minimize back to system tray. AllTray works well with Gnome, KDE, XFCE 4, Fluxbox and WindowMaker.... Platforms: *nix

Gammu+ project can be named as next step in evolution. Author of this www started to think about new project written in C++ using classes somewhere in August 2002. Some first source was written in October 2003 (16-10-2003 can be taken as start date), but a little faster progress started in... Platforms: *nix

breveCreatures is a screensaver that simulates the evolution of virtual creatures in a physically simulated 3D world. Beginning initially with random creatures, the screensaver uses a genetic algorithm to develop creatures capable of realistic locomotion behaviors. The concept and algorithms... Platforms: Mac

Chrysalis-A is a real-time causal pace evolution widget/game. You start with nothing but plants and dirt. By figuring out the right temperature that promotes growth/evolution you must guide an unknown species through several stages of evolution until it hopefully evolve into the Elders. Platforms: Mac

MPEx is a small, easy to use application designed to help you explore the topology and other features of membrane proteins by means of hydropathy plots based upon thermodynamic and biological principles. The program is based on sliding-window analysis that represents an amino acid sequence as a... Platforms: Windows

BioDWH is a simple, very easy to use tool specially designed to offer you a bioinformatics data warehouse software kit that integrates biological information from multiple public life science data sources into a local RDBMS. This application provides up-to-date integrated knowledge, platform and... Platforms: Windows

VitaPad is a small, easy to use, Java based application, specially designed to offer you a program to help you visualize and analyze pathways. You can use this software not only to visualize biological pathways but also to map experimental data to them. for WindowsAll Platforms: Windows

IsTa is a small, simple application that will help you find closed frequent item sets by intersecting transactions, which is based on the insight that an item set is closed if it is the intersection of all transactions that contain it. Such an approach can be highly competitive in special... Platforms: Windows

Carpenter is a handy, easy to use application specially designed to help you find closed frequent item sets with the carpenter algorithm, which enumerates transaction sets, in contrast to many other frequent item set mining algorithms, which enumerate item sets. Such an approach can be highly... Platforms: Windows

CWC Simulator is a C++ implementation of CWC (Calculus of Wrapped Compartments). This package is basically a rewriting-based calculus for the representation and simulation of biological systems. Platforms: Windows

An evolution simulation game. In it the gamer controls three important environmental variables inside two evolution chambers. Available Food, Temperature and CO2 level. As the gamer adjusts these level during the course of the simulation, the path of evolution and the type of species that evolve... Platforms: Mac

A powerful and user-friendly graphical software designed to conduct large scale exploration of biological sequence databanks and related information (functional, taxonomy, pathways, mutations, etc). KoriBlast can be used for a wide range of applications in genomics and proteomics, such as: full... Platforms: Mac

The next evolution in online communication -  a remarkably easy way to have a face-to-face video chat with friends, family or colleagues, no matter where they are in the world. ooVoo Video Chat is remarkably easy to use: easy to download, easy to install, and best of all:it's Free!... Platforms: Mac

Clotho is a comprehensive and reliable software for developing and managing synthetic biological systems. It also provides a mechanism to begin the process of creating standardized data, algorithms, and methodologies for synthetic biology. This tool allows for the development of independent... Platforms: Windows

BioJava is a tool that includes objects for manipulating biological sequences and file parsers. It also features a DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and powerful analysis and statistical routines including a dynamic... Platforms: Windows

Evoversum is a fast Darwinian evolution simulator. The program simulates a 2D world populated with "animals" which struggle for food, reproduce and may also eat each other. The subject of evolution is their behavior, which may become quite complex. Platforms: *nix

GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded... Platforms: Mac, Linux

Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution. Platforms: Windows, Mac, Linux