Biological Data Sets

ArcExplorer is a lightweight GIS data viewer developed by ESRI. This freely available software offers an easy way to perform basic GIS functions. ArcExplorer is used for a variety of display, query, and data retrieval applications and supports a wide variety of standard data sources. It can be... Platforms: Mac

Introducing KoalaCalc Classic, the long-awaited Mac OS 9 port of the free multi-purpose calculator for Mac OS X. In its compacted state, KoalaCalc looks similar to the standard calculator that comes with the Mac OS. However, simply click the 'advanced' button and KoalaCalc comes to life to become... Platforms: Mac

PySlice was built using the Python programming language to act as a specialized templating system. It was built in order to replace variables in a template data sets with numbers taken from all combinations of a grouped series of numbers. It creates a dataset from input template files for each... Platforms: Windows

BioImageXD is a software package for processing, analyzing and visualizing multidimensional image data. As the name implies, the software is primarily intended for biological data, for instance confocal microscopy images of living cells, but it is fully suitable for working with any kind of... Platforms: Windows, XP, 2003, Windows Vista, 7

Creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options. Some bioinformatics features are: - GenBank searching and viewing (linear and circular views) - Multiple alignment of... Platforms: Mac

Clotho is a comprehensive and reliable software for developing and managing synthetic biological systems. It also provides a mechanism to begin the process of creating standardized data, algorithms, and methodologies for synthetic biology. This tool allows for the development of independent... Platforms: Windows

XMLPipeDB is a suite of tools for building relational databases from XML sources with minimal manual processing of the data. While the applicability is general, our motivation was to facilitate the management of biological data from different sources. Platforms: Windows, Mac, Linux

This is a program for exploring longitude/latitude based data stored in NetCDF file format. Ncvtk is built on top of the VTK toolbox. Ncvtk has been designed with the aim of offering a high degree of interactivity to scientists who have a need to explore three-dimensional, time-dependent... Platforms: Windows, Mac, *nix, Python, BSD Solaris

This function quickly finds local peaks or valleys (local extrema) in a noisy vector using a user defined magnitude threshold to determine if each peak is significantly larger (or smaller) than the data around it. The problem with the strictly derivative based peak finding algorithms is that if... Platforms: Matlab

Intended for 3D geological/geophysical visualisation of layered data and will eventually form part of a geophysical visualisation package.Run ThreedDemo to get an idea of how to use. INPUTS: LayerN: The number of the layer to be plotted R: a m*n*k matrix of colour/resistivity data for each layer... Platforms: Matlab

SEMPHY is a tool for data-intensive phylogenetic reconstruction. SEMPHY infers phylogenies by Maximum Likelihood, the most established criterion for finding the correct phylogenetic tree. SEMPHY searches for both the most likely topology of the evolutionary tree, and the optimal lengths of its... Platforms: Mac

LabPlot is a free software data analysis and visualization application built on the KDE Platform. It integrates well into a KDE workspace but can just as well be used in another desktop environment. You can use LabPlot to produce publication quality plots of your data in addition to modeling... Platforms: *nix

aipy is a Python package that collects together tools for radio astronomical interferometry. In addition to pure-python phasing, calibration, imaging, and deconvolution code, this package includes interfaces to MIRIAD (a Fortran interferometry package) and HEALPix (a package for representing... Platforms: *nix

The BlockCanvas project provides a visual environment for creating simulation experiments, where function and data are separated. Thus, you can define your simulation algorithm by visually connecting function blocks into a data flow network, and then run it with various data sets (known as... Platforms: *nix

GiMeSpace Mega AI predictor is a program that is using past historical data to predict future data. Obvious applications can be predicting stock market shares and any other hard to predict data streams. But also for more simple data sets this program provides superiour learning capacity. It is... Platforms: Windows, Windows 8, Windows 7, Windows Server

TDL - Win Neural Net Pattern Recog. Tool Quick, hassle-free automatic construction of NN by use of evolutionary processes. Trans-Dimensional Learning allows multiple data sets to be learned incrementally, regardless of differences in number of inputs and outputs. Complete graphical support of... Platforms: Windows

Wayback Machine is an open source java implementation of the The Internet Archive Wayback Machine. The current production version of the Wayback Machine is implemented in perl, and lacks in maintainability and extensibility. Also, the code is not open source. Primary motivation for the new... Platforms: *nix

Jameleon project is an automated testing framework that can be used by technical and non-technical users alike. One of the main concepts behind it is to create a group of keywords or tags that represent different screens of an application. All of the logic required to automate each particular... Platforms: *nix

DBIx::XML::DataLoader contains a set of modules that are meant to work together. DBIx::XML::DataLoader.pm the core for this package DB.pm which contains the sql specific stuff MapIt.pm handles parsing the xml mapping file IsDefined.pm a simple module for making sure empty data sets are defined... Platforms: *nix

Arch is an open source extension of Apache Nutch (a popular, highly scalable general purpose search engine) for intranet search. Not happy with your corporate search engine? Not surprising, very few people are. To the best of our knowledge, there are no intranet engines that work as well as the... Platforms: Windows, Windows 8, Windows 7, Windows Server