Apa Annotations

Abbot helps you test your Java UI. Abbot framework comprises Abbot, which lets you programmatically drive UI components, and Costello (built on Abbot) which allows you to easily launch, explore and control an application. The framework may be used with both scripts and compiled code. This... Platforms: *nix

pngcheck verifies the integrity of PNG, JNG and MNG files (by checking the internal 32-bit CRCs [checksums] and decompressing the image data); It can optionally dump almost all of the chunk-level information in the image in human-readable form.For example, it can be used to print the basic... Platforms: Windows, Mac, *nix, C/C++, BSD Solaris

ddc-concordance is a search engine for linguists. It lets you search for words or sequences of words together with morphological patterns. This project was created to help linguists find a particular collocation or word in a given context. Whats New in This Release: - New features include... Platforms: *nix

X2J is an XML binding framework which performs validation, serialization, and deserialization without the use of XSDs. Instead, X2J project incorporates the strength of Annotations. Unit testing is cruicial. If there is Anything you can say about the tools you need in order to create a... Platforms: *nix

An ethics-enabled search engine can act as a complement to the well-known price search engines (a topic I have been working on earlier) and turn ethical considerations into an easily advertisable advantage. A search engine can store imprint and ethics of organizations that publish them and allow... Platforms: *nix

Net::DBus provides a Perl binding for the DBus messaging system. Net::DBus enables services to be exported to the bus, as well as full use of services present on the bus. Modules: Net::DBus Perl extension for the DBus message system0.33.2 Net::DBus::ASyncReply asynchronous method reply... Platforms: *nix

Callplot is a tool for drawing "call-flow" diagrams of the kind common in the telecommunications industry. Input to the tool is in a terse textual notation, and output from the tool can be in several formats, including "ASCII-art", pic format, XML, SVG, and VML. The -pic option produces pic(1)... Platforms: *nix

jZeno is a meta-project that integrates a collection of java open source libraries, to form a ready-to-use web development environment. jZeno is made to allow people to create web applications by using pure java development as much as possible. The main architectural goal of Largely reducing the... Platforms: *nix

ProGuard is a free Java class file shrinker, optimizer, and obfuscator. ProGuard project can detect and remove unused classes, fields, methods, and attributes. It can then optimize bytecode and remove unused instructions. Finally, it can rename the remaining classes, fields, and methods using... Platforms: *nix

Bio::AnnotationCollectionI is a Perl interface for annotation collections. SYNOPSIS # get an AnnotationCollectionI somehow, eg $ac = $seq->annotation(); foreach $key ( $ac->get_all_annotation_keys() ) { @values = $ac->get_Annotations($key); foreach $value ( @values ) { # value is an... Platforms: *nix

Bio::Seq is a sequence object, with features. SYNOPSIS # This is the main sequence object in Bioperl # gets a sequence from a file $seqio = Bio::SeqIO->new( -format => embl , -file => myfile.dat); $seqobj = $seqio->next_seq(); # SeqIO can both read and write sequences; see Bio::SeqIO #... Platforms: *nix

xpidl project is an XPIDL parser. SYNOPSIS xpidl -m mode [-a] [-w] [-v] [-t version number] [-I path] [-o basename | -e filename.ext] filename.idl OPTIONS -a Emit annotations to typelib. -w Turn on warnings (recommended). -v Display version. -t version number Create a... Platforms: *nix

GO::TermFinder is a Perl module that can identify GO nodes that annotate a group of genes with a significant p-value. This package is intended to provide a method whereby the P-values of a set of GO annotations can be determined for a set of genes, based on the number of genes that exist in the... Platforms: *nix

rpng/rpng2/wpng are the demo programs that accompany OReillys PNG: The Definitive Guide. rpng is a simple file viewer with the ability to set a background color when displaying transparent PNGs. rpng2 is a progressive PNG viewer, designed to work like a web browser (though it contains no... Platforms: *nix

Jodd is a generic purpose open-source Java library bundled with few lightweight frameworks and components: bean manipulation tool, Db for easier database access, Madvoc for web works, Proxetta for building proxies, JDateTime for elegant time handling, Petite as a container. Special attention is... Platforms: *nix

DORM4J (Dynamic Object-Relational Mapping for Java) is an O/R mapping library for Java. DORM4J library uses annotations in JDK 1.5 and dynamic features of the Java language to implement O/R mapping functions without additional XML config files. The development of DORM4J was inspired from the... Platforms: *nix

TECOAS project is an application to interactively browse and discuss a document. It is intended to assist with the co-authoring of papers with remote partners, but is also adapted to small seminars and online discussions. Its main functions are shared browsing of a document, the sharing of... Platforms: *nix

MassSpec::ViewSpectrum is a Perl extension for viewing a mass spectrum. SYNOPSIS use MassSpec::ViewSpectrum; open PNG, ">mygraphic.png" or die "Unable to open output filen"; binmode PNG; my @masses = (1036.4,1133,1437,1480,1502); my @intensities = (0.1,0.15,0.05,0.10,0.2); my... Platforms: *nix

pBeans project is a Object/Relational (O/R) database mapping layer. It is designed to be simple to use and automated. The idea is that you save time and effort by simply focusing on writing Java classes, and not worrying about maintenance of matching SQL scripts, schema evolution, XML based... Platforms: *nix

Bio::Graphics::Panel is a Perl module to generate GD images of Bio::Seq objects. SYNOPSIS # This script parses a GenBank or EMBL file named on the command # line and produces a PNG rendering of it. Call it like this: # render.pl my_file.embl | display - use strict; use Bio::Graphics;... Platforms: *nix