Annotate Character Matrix File

Phenex is an application for annotating character matrix files with ontology terms. Character states can be annotated using the Entity-Quality syntax for ontologically describing phenotypes. In addition, taxon entries can be annotated with identifiers from a taxonomy ontology. Phenex saves... Platforms: Windows

OCRE application is an optical character recognition (OCR) system that reads an image file and writes ASCII or Unicode characters. Languages: English, French, Polish, Spanish Installation: unpack the file ...tgz (tar xzvf ...) # vi config.h instala # you can change the directory for the... Platforms: *nix

A flat file is a file that contains records. Each record is specified in a single line. Fields from each record may either have a fixed width, or may be delimited by commas (CSV), tube (|), whitespace, tabs, or any other character.Flat File Database Manager will allow you to manage... Platforms: PHP

A flat file is a file that contains records. Each record is specified in a single line. Fields from each record may either have a fixed width, or may be delimited by commas (CSV), tube (|), whitespace, tabs, or any other character.Flat File Database Manager will allow you to manage... Platforms: PHP

MrBayes is a simple, easy to use application specially designed for the Bayesian estimation of phylogeny. The program takes as input a character matrix in a NEXUS file format. The output is several files with the parameters that were sampled by the MCMC algorithm. MrBayes can summarize the... Platforms: Windows

The fab4 browser builds a modern UI around the Multivalent, and extends it with support for distributed annotations and new file formats. This project website includes the latest developments Features Reads and renders HTML, PDF, DVI, SVG, JPEG, PPT, JT, XLS, OGG Theora + vorbis, MP3 and... Platforms: Mac

Statistics::Gap Perl module is an adaptation of the Gap Statistic. SYNOPSIS use Statistics::Gap; $predictedk = &gap("prefix", "vec", INPUTMATRIX, "rbr", "h2", 30, 10, rep, 90, 4); OR use Statistics::Gap; $predictedk = &gap("prefix", "vec", INPUTMATRIX, "rbr", "h2", 30, 10, rep, 90, 4,... Platforms: *nix

Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db... Platforms: *nix

TweakPNG is a low-level utility for examining and modifying PNG image files. It runs on Windows 95 or higher (98, ME, 2000, XP, etc.). In order to use it, you will need to be at least somewhat familiar with the internal format of PNG files.TweakPNG is an interactive PNG file editor utility that... Platforms: Windows, C/C++,

Seis_pick provides an interactive environment for picking seismic waveforms. It has been developed with the aim of processing 3-component downhole microseismic data, although is suitable for all 3-component seismic data. Seis_Pick displays seismic traces, allowing the user to pick P-wave and... Platforms: Matlab

This script contains a function that analyzes an open xml file for its characters encoding by - checking for a unicode BOM or (on failure); - searching the xml declaration at the beginning of the file for the "encoding" attribute ;It attempts to detect the character encoding of the xml file... Platforms: Windows, Mac, *nix, Python, BSD Solaris

Quadrophonic Matrix Decoder & Player is a small, simple, Java based application specially designed to help you decode quadrophonic matrix encoded file. Quadrophonics is a technology developed and used in the 1970's that applies an encoding matrix to the four input channels LF (Left Front), RF,... Platforms: Windows

HXTT Character Set Converter is a free toolkit for text file. That freeware should work on any platform that supports Java. Platforms: All

File Renamer Basic is a powerful and yet easy to use program that allows the user to rename files, folders, and MP3 files with ease. It has a filename filter so you can easily narrow down your search to only a specifc type of file or filename to work with. You can also remove x number of... Platforms: Windows

File::Sort is a Perl module to sort a file or merge sort multiple files. SYNOPSIS use File::Sort qw(sort_file); sort_file({ I => [qw(file_1 file_2)], o => file_new, k => 5.3,5.5rn, -t => | }); sort_file(file1, file1.sorted); This module sorts text files by lines (or records).... Platforms: *nix

File::Stat::ModeString - conversion file stat mode to/from string representation. SYNOPSIS use File::Stat::ModeString; $string = mode_to_string ( $st_mode ); $st_mode = string_to_mode ( $string ); $type = mode_to_typechar( $st_mode ); $record = < IN >; chomp $record; $record =~... Platforms: *nix

Log::Dispatch::File::Rolling is a Perl object for logging to date/time/pid stamped files. SYNOPSIS use Log::Dispatch::File::Rolling; my $file = Log::Dispatch::File::Rolling->new( name => file1, min_level => info, filename => Somefile%d{yyyyMMdd}.log, mode => append ); $file->log(... Platforms: *nix

Log::Dispatch::File::Alerts is a Perl object for logging to alert files. SYNOPSIS use Log::Dispatch::File::Alerts; my $file = Log::Dispatch::File::Alerts->new( name => file1, min_level => emerg, filename => Somefile%d{yyyy!!!!}.log, mode => append ); $file->log( level => emerg,... Platforms: *nix

CoC ChaGen is a character generator for Chaousium Incs rpg Call of Cthulhu.CoC CharGen is released under the GNU GPL. It is developed in 100% pure Java, and should hence be usable on any platform with Java support. A main goal for the comming 2.0 release will be an implementation of the Byakhee... Platforms: *nix

File::BSDGlob is a Perl extension for BSD glob routine. SYNOPSIS use File::BSDGlob :glob; @list = glob(*.[ch]); $homedir = glob(~gnat, GLOB_TILDE | GLOB_ERR); if (GLOB_ERROR) { # an error occurred reading $homedir } ## override the core glob (even with -T) use File::BSDGlob globally;... Platforms: *nix