Analyzing

Amide's a Medical Image Data Examiner: Amide is a tool for viewing, registering, and analyzing anatomical and functional volumetric medical imaging data sets.

ASDN - 'Agile Supply Demand Networks' is software for analyzing and developing logistics networks.

CD++Builder is an Eclipse plug-in that integrates varied applications and utilities that aids in creating CD++ DEVS models, simulating and analyzing results. Among these applications, CD++Modeler provides a graphical editor for coupled and DEVS-Graph


Platforms: Windows, Mac, Linux

Convince Me is a Java application for generating and analyzing arguments. Convince Me uses a connectionist model, called ECHO, to provide feedback on the coherence of the arguments entered into the application.


Platforms: Windows, Mac, Linux

CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74


Platforms: Windows, Mac, BSD, Linux

A web-based system for upoading, managing, sharing, and analyzing bioinformatic data. The system is primarily written in python, and runs on both linux and MacOs.


Platforms: Mac, Linux

Tools for converting BIAS Deck projects to OMF-compatible files, examining OMF files (and other Bento-compatible containers), and analyzing binary file formats.


Platforms: Mac

DNA is an open, flexible and extensible deep network analyzer software server and software architecture for gathering and analyzing network packets, network sessions and applications protocols, passively off enterprise class networks.


Platforms: Windows, Mac, Linux

GoFigure2 is an open-source, cross-platform application for visualizing, processing and analyzing of multidimensional microscopy data. Users can visualize, segment and track cells through time, detect cell-division and ultimately generate lineages.


Platforms: Windows, Mac, Linux

IDL and ENVI software tools for opening, viewing, filtering, and analyzing Mal Geoscience RAMAC ground-penetrating radar (GPR) data.


Platforms: Windows, Mac, Linux

jAudio is a project implementing a number of common feature extraction algorithms for analyzing audio in java. Output is either in Weka's ARFF format or the ACE format. Can be used either as a GUI application, command-line application, or embedded.


Platforms: Windows, Mac, Linux

The Java Data Mining Package (JDMP) is a library that provides methods for analyzing data with the help of machine learning algorithms (e.g. clustering, classification, graphical models, neural networks, Bayesian networks, text processing, optimization).


Platforms: Windows, Mac, Linux

Java Ocean Grid (JOG) is a Java package which provides the user with a simple and effective object oriented approach to manipulating/analyzing gridded oceanographic and meteorological data.


Platforms: Windows, Mac, Linux

A Java library for loading, editing, analyzing and saving pixel image files. Java 1.1 or higher is required. Various file formats are supported, demo applications for the command line and the AWT GUI toolkit are provided.


Platforms: Windows, Mac, Linux

ljArchive is a tool for downloading, browsing, and analyzing journal entries and comments from LiveJournal (or LiveJournal clones).


Platforms: Windows, Mac, Linux

Logpat is a tool for analyzing server-logfiles. It can be used for research about interactions with hypertext-environments. The special purpose is to analyze information not only about page counts (like many other analyzing-tools do) but also about sequen


Platforms: Windows, Mac, Linux

MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic


Platforms: Windows, Mac, Linux

Portdowngrade helps to downgrade FreeBSD ports by analyzing the history of commits to the port and presenting the user the list of changes. By selecting one, the port can be set back to a previous version easily.


Platforms: Mac, BSD, Linux

A python library for handling and analyzing biological sequence annotations as described in GFF files (General Feature Format). The library is intended to be a complete framework for this file format.


Platforms: Windows, Mac, Linux

PyVib2 is a program for analyzing vibrational motion and vibrational spectra. It is an open source 'all-in-one' solution for scientists working in the field of vibrational spectroscopy (Raman and IR) and vibrational optical activity (ROA and VCD).


Platforms: Windows, Mac, Linux