Amino Acid

This contest concerns a very simplified two-dimensional version of the protein folding problem. Given the amino acid sequence of a simplified protein, your job is to determine a final "optimally folded" configuration. Each potential arrangement of the protein sequence is associated with an energy... Platforms: Matlab

Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid... Platforms: Mac

What is snpEff? It's a variant effect predictor tool, it predicts the effect of genetic variations (SNPs, insertions, deletions and MNPs). Release Candidate 1 Take a look at all the new features added Database download command, e.g. "java -jar snpEff.jar download GRCH37.64" RefSeq annotations... Platforms: Mac

FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison. Features . Comparison of Genomes, protein and nucleic acid sequences... Platforms: *nix

nebseq is a Python module for basic biological sequence manipulations. Import as usual >>> import nebseq Reverse complements The only note here is that revcomp does not check the input sequence to see if it looks like DNA or RNA. >>> nebseq.revcomp('ACGT') 'ACGT' >>>... Platforms: *nix

Domino on Acid project is a weird colorful solitaire variant of dominoes that visualizes natural deduction. Superficially, Dominoes on Acid is a solitaire variant of Dominoes with weird colorful tiles (and this view is enough to play the game). But on a deeper level it is a GUI for natural... Platforms: *nix

CurTiPot pH & Acid-Base Titration Curves. A powerful all-in-one freeware for pH calculation, experimental data analysis and simulation of titration curves of acids, bases, salts and buffers (from simple solutions to complex mixtures), with interpolation, smoothing and nonlinear regression.... Platforms: Windows

Acid Reflux BRK is a TTF character that was made in order to help you change the ordinary appearance of your papers. All you need to do is get and install the font onto your computer then use it when writing your text documents to see how it will modify their aspect. To install it, you can... Platforms: Windows

Superficially, Dominoes on Acid is a solitaire variant of Dominoes with weird colorful tiles. But on a deeper level it is a GUI for natural deduction. Every completed domino is equivalent to a proof of a tautology in classical propositional logic. Platforms: Windows, Mac, Linux

Acid Scanner is lightweight network auditing tool (scanner) for home or office use that allows administrators, managers, or common users scan their networks, uncover possible security risks and find unprotected ways to their computers. This software is freeware and fully portable, no need to... Platforms: Windows

The Nucleic Acid Modeling Tool(NAMOT) is a program to allow users to manipulate molecular models of nucleic acids based on a set of reduced co-ordinates developed at Los Alamos National Laboratory and the Max Planck Institute for Biophysical Chemistry. Platforms: *nix

Clearlooks-LemonGraphite is a simple, clear and acid GTK+ theme. It looks great also with gilouche window border.. Platforms: *nix

OligoLocator is a simple, Java based application designed to identify the position of oligonucleotides within nucleic acid sequences with varying degrees of mismatch between the two. Platforms: Windows

A pH Calculator, a Virtual Titrator, a Real Titration Data Analyzer, a Distribution Diagram Generator - that's CurTiPot, the all-in-one freeware to learn, teach and work with chemical equilibrium of acids, bases, salts and buffers at home, classroom, interactive "dry lab", routine or research... Platforms: Windows

How do strong and weak acids differ? Use lab tools on your computer to find out! Dip the paper or the probe into solution to measure the pH, or put in the electrodes to measure the conductivity. Then see how concentration and strength affect pH. Can a weak acid solution have the same pH as a... Platforms: Mac

VertrigoServ has been developed as a highly professional, easy to install package consisting of Apache (HTTP web server), PHP (reflective programming language), MySQL (multithreaded, multi-user, SQL Database Management System), SQLite (ACID-compliant relational database management system),... Platforms: Windows, PHP,

SIGOF (Security Information Graphics Oriented Forensic) has been developped as a complement of ACID or BASE project by implementing useful and detailed graphical presentation of security information/events. SIGOF is a web-based project, written in PHP, and it can exploit any secuity information... Platforms: *nix

Total Wellness Cleanse During the "Cleanse Phase" you will be following our time-proven cleansing diet which is geared towards re-establishing your body's proper acid-alkaline balance, reducing your cravings for sugar, and creating an internal environment within your body that promotes health,... Platforms: Windows

ChemToolBox, the swiss army knife of the lab worker, is a freeware which contains numerous scientific data very useful in a laboratory. Thanks to its own database, ChemToolBox will easily substitute to the time-consuming use of scientific books (such as Handbooks) or online databases.... Platforms: Windows

Royalty free fully featured SQL database engine with nearly 1 million installations worldwide. Use as embedded, like MS access, or as large clustered, like Oracle/DB2, distributed database. ScimoreDB embedded, server or distributed databases has been optimized for MS Windows and .NET to deliver... Platforms: Windows