Affymetrix Cdf

Bio::Affymetrix::CDF is a Perl module to parse Affymetrix CDF files. SYNOPSIS use Bio::Affymetrix::CDF; # Parse the CDF file my $cdf=new Bio::Affymetrix::CDF({"probemode"=>0}); $cdf->parse_from_file("foo.cdf"); # Find some fun facts about this chip type print... Platforms: *nix

Math::CDF is a Perl module to generate probabilities and quantiles from several statistical probability functions. SYNOPSIS use Math::CDF; $prob = &Math::CDF::pnorm(1.96); if( not defined($z = &Math::CDF::qnorm(0.975)) ) { die "qnorm() failed"; } or use Math::CDF qw(:all); $prob =... Platforms: *nix

We attempt to reproduce and efficiently implement in MATLAB publicly available methods of Affymetrix MAS 5 and GCOS 1.2 software that perform single-array and comparison analysis for Affymetrix data given by CEL and CDF files and create corresponding CHP data structures:1. CHP data structure is... Platforms: Matlab

Using Affymetrix CEL files as its source, this script combines quantile normalized SNP A and B probe intensities for each marker into a theta value, then calculates B-Allele Frequencies for each marker. For information on accessing B Allele Frequencies for Illumina data, Platforms: Mac

This script imports Affymetrix DMET data. Hemizygous markers are converted to homozygous markers, and tri-allelic markers are converted into two columns, each containing the major allele and one of the minor alleles. A DMET marker map (see below) can be selected after selecting the DMET report... Platforms: Mac

This user interface allows a user to load some Affymetrix data in an Excel file and perform some basic operations on it - log transform, log ratio, normalization, noise reduction, filtering, PCA and clustering, in addition to some visualizations like profile plots, boxplots and matrix... Platforms: Matlab

SNP Analyser was developed as an easy-to-use and useful utility for the efficient analysis and management of Affymetrix SNP DMET Data analysis. SNP Analyser is a software that was designed with the help of the Java programming language. Platforms: Windows

Math software is often bulky, overloaded with useless features and requires reading huge manual before attempting to use it. SLGallery is the unique probability distribution calculation toolbox featuring 11 continuous and 4 discrete functions. With SLGallery it is possible to plot graph and find... Platforms: Windows

Common Data Format is a self-describing data abstraction for the storage and manipulation of multidimensional data in a platform- and discipline-independent fashion. It consists of a scientific data management package (known as the "CDF Library") that allows programmers and application... Platforms: *nix

NetCDF is a format developed at Unidata that was inspired by the CDF format from NASA. NetCDF stands for "Network Common Data Form" and is a self-describing data format, commonly used in scientific and engineering applications.. The netCDF interface, library, and format support the creation,... Platforms: *nix

The file contains a 2 x 495 matrix that can be read using the MatLab "csvread" command. Requirements: - MATLAB 7.8 or higher Platforms: Windows, Mac, *nix, Matlab, BSD Solaris

function [P R]=Global_Moupfouma(Rzz1,ClimZone)Function implementing the Global Moupfouma model,As per Electronic Letters paper "Point Rainfall rate cumulativedistribution valid at various locations"F. Moupfouma and L. Martin, EL, Vol.29, No.17, Aug. 1993InputsRzz1: Rain rate value exceeded 0.01%... Platforms: Matlab

Electronic paper product catalog software with page visualization preserving the original layout and connecting pages with the integrated database. No data preparation needed: use your existing catalogs from DTP or PDF on any PC and/or the Internet. Automatically connects article numbers on pages... Platforms: Windows

bandwidthd tracks usage of TCP/IP network subnets and builds HTML files with graphs to display network utilization. Charts are built by individual IP to show their utilization over 2, 8, 45, and 400 day periods. It color codes HTTP, HTTPS, TCP, UDP, ICMP, VPN, and P2P traffic. BandwidthD runs... Platforms: *nix

OPeNDAP is a client/server system for making local data accessible to remote locations without regard to the local or remote storage format, architecture, or environment. BES is a new, high-performance back-end server software framework that allows data providers more flexibility in providing... Platforms: *nix

XML::TMX::Writer is a Perl extension for writing TMX files. SYNOPSIS use XML::TMX::Writer; my $tmx = new XML::TMX::Writer(); $tmx->start_tmx(ID => paulojjs); $tmx->add_tu(SRCLANG => en, en => some text, pt => algum texto); $tmx->add_tu(SRCLANG => en, en => some text, pt => algum... Platforms: *nix

The Integrated Genome Browser (IGB, pronounced Ig-Bee) is an interactive, zoomable, scrollable software program you can use to visualize and explore genome-scale data sets, such as tiling array data, next-generation sequencing results, genome annotations, microarray designs, and the sequence... Platforms: Windows

GNomEx is Genomic LIMS and Analysis Project Center designed by the Huntsman Cancer Institute for use by microarray and next generation sequencing core facilities and large research laboratories. KWs: Illumina, Affymetrix, Agilent, MAGE, MySQL/Flex... Platforms: Windows

Statistical Distribution Explorer is an easy-to-use and accessible program that allows users to explore the properties of various statistical distributions. You will also be abel to calculate the cumulative distribution function CDF, probability distribution function PDF, or quantiles /... Platforms: Windows, XP, Windows Vista, 7

Autoplot is a small, simple, very easy to use application specially designed to offer users an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf,... Platforms: Windows